Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10]
78 sequences; 43,168,069 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq8 279 8e-73
seq2 114 2e-23
seq33 93.3 6e-17
>seq8
Length=7975
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 3385 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3328
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 3327 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 3268
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 3267 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 3210
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3209 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3161
>seq2
Length=4137638
Score = 114 bits (126), Expect = 2e-23
Identities = 130/172 (76%), Gaps = 3/172 (2%)
Strand=Plus/Minus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116
|||||||||||||| ||| || ||||||| ||||||||| ||| || | | ||| | |||
Sbjct 2833195 TTCCTCGTTGAAGAGCAATAACTGCAATGCTCTATCCCCTTCATGACGGAGTTTAACAAG 2833136
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||||||||||| |||| || | | | ||| | | || | || | |||
Sbjct 2833135 ATTACCCGGACCTTTCGGATAAAGAAGTCG--CCGTCAAGCCCGCCATTCCAGTGTTCGT 2833078
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|| || ||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 2833077 GCTGCTCAGAACACACAAGGGCATCGCAGACCTGTTATTGCCACAAACTTCC 2833026
>seq33
Length=5643559
Score = 93.3 bits (102), Expect = 6e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173
||||||| || ||||| | || || |||| |||| || | | |||||| |||||
Sbjct 2019127 AAGATTAGCCAGACCTTTTGGACA--GTGAAGTACTCACTGGCTCCGTCAGTGCCGCGCG 2019184
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223
||||||| |||||||||||||||||| ||||||||| || ||||||| ||
Sbjct 2019185 CGTGCGGGCCAGAACATCTAAGGGCACCACAGACCTCTTGTTGCCTCGAA 2019234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999431770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |