Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8 279 8e-73 seq2 114 2e-23 seq33 93.3 6e-17 >seq8 Length=7975 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 3385 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3328 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 3327 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 3268 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 3267 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 3210 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3209 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3161 >seq2 Length=4137638 Score = 114 bits (126), Expect = 2e-23 Identities = 130/172 (76%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116 |||||||||||||| ||| || ||||||| ||||||||| ||| || | | ||| | ||| Sbjct 2833195 TTCCTCGTTGAAGAGCAATAACTGCAATGCTCTATCCCCTTCATGACGGAGTTTAACAAG 2833136 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||||||||| |||| || | | | ||| | | || | || | ||| Sbjct 2833135 ATTACCCGGACCTTTCGGATAAAGAAGTCG--CCGTCAAGCCCGCCATTCCAGTGTTCGT 2833078 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || || ||||||| ||||||||| |||||||||||||||| ||||||||| Sbjct 2833077 GCTGCTCAGAACACACAAGGGCATCGCAGACCTGTTATTGCCACAAACTTCC 2833026 >seq33 Length=5643559 Score = 93.3 bits (102), Expect = 6e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 ||||||| || ||||| | || || |||| |||| || | | |||||| ||||| Sbjct 2019127 AAGATTAGCCAGACCTTTTGGACA--GTGAAGTACTCACTGGCTCCGTCAGTGCCGCGCG 2019184 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||| |||||||||||||||||| ||||||||| || ||||||| || Sbjct 2019185 CGTGCGGGCCAGAACATCTAAGGGCACCACAGACCTCTTGTTGCCTCGAA 2019234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999431770