Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10]
78 sequences; 43,168,069 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq8 443 4e-122
seq2 150 3e-34
seq33 131 3e-28
>seq8
Length=7975
Score = 443 bits (490), Expect = 4e-122
Identities = 284/309 (92%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 3078 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 3137
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3138 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3197
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| |||
Sbjct 3198 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 3255
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3256 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 3315
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 3316 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 3375
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 3376 CCCTTTGTA 3384
>seq2
Length=4137638
Score = 150 bits (166), Expect = 3e-34
Identities = 141/179 (79%), Gaps = 8/179 (4%)
Strand=Plus/Plus
Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159
|||||||||||| |||||||||||||||| ||||||||| ||||||| || |||||
Sbjct 2833023 GATGGAAGTTTGTGGCAATAACAGGTCTGCGATGCCCTTGTGTGTTCTGAGCAGCACGAA 2833082
Query 160 CGCTACACTGACAGA---GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216
| || | || | | | | ||| ||| | | | || |||||| |||||||||
Sbjct 2833083 CACTGGAATGGCGGGCTTGACGGCGACTTCTTTATC-----CGAAAGGTCCGGGTAATCT 2833137
Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275
|||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2833138 TGTTAAACTCCGTCATGAAGGGGATAGAGCATTGCAGTTATTGCTCTTCAACGAGGAAT 2833196
>seq33
Length=5643559
Score = 131 bits (144), Expect = 3e-28
Identities = 101/119 (85%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167
|| ||||||| || ||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 2019234 TTCGAGGCAACAAGAGGTCTGTGGTGCCCTTAGATGTTCTGGCCCGCACGCGCGCGGCAC 2019175
Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226
|||| |||||| |||| | |||| || || ||||||||| ||||||||||||||||
Sbjct 2019174 TGACGGAGCCAGTGAGTACTTCAC--TGTCCAAAAGGTCTGGCTAATCTTGTTAAACTC 2019118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947199261184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |