Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8 443 4e-122 seq2 150 3e-34 seq33 131 3e-28 >seq8 Length=7975 Score = 443 bits (490), Expect = 4e-122 Identities = 284/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 3078 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 3137 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3138 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3197 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| ||| Sbjct 3198 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 3255 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3256 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 3315 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 3316 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 3375 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 3376 CCCTTTGTA 3384 >seq2 Length=4137638 Score = 150 bits (166), Expect = 3e-34 Identities = 141/179 (79%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159 |||||||||||| |||||||||||||||| ||||||||| ||||||| || ||||| Sbjct 2833023 GATGGAAGTTTGTGGCAATAACAGGTCTGCGATGCCCTTGTGTGTTCTGAGCAGCACGAA 2833082 Query 160 CGCTACACTGACAGA---GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216 | || | || | | | | ||| ||| | | | || |||||| ||||||||| Sbjct 2833083 CACTGGAATGGCGGGCTTGACGGCGACTTCTTTATC-----CGAAAGGTCCGGGTAATCT 2833137 Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 |||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 2833138 TGTTAAACTCCGTCATGAAGGGGATAGAGCATTGCAGTTATTGCTCTTCAACGAGGAAT 2833196 >seq33 Length=5643559 Score = 131 bits (144), Expect = 3e-28 Identities = 101/119 (85%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167 || ||||||| || ||||||||| |||||||||||||||||| |||||||||||| ||| Sbjct 2019234 TTCGAGGCAACAAGAGGTCTGTGGTGCCCTTAGATGTTCTGGCCCGCACGCGCGCGGCAC 2019175 Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||| |||||| |||| | |||| || || ||||||||| |||||||||||||||| Sbjct 2019174 TGACGGAGCCAGTGAGTACTTCAC--TGTCCAAAAGGTCTGGCTAATCTTGTTAAACTC 2019118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199261184