Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10]
105 sequences; 42,707,783 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq19 473 2e-131
seq4 122 2e-25
seq18 78.8 2e-12
>seq19
Length=7974
Score = 473 bits (524), Expect = 2e-131
Identities = 294/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 3989 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 4048
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||| |||||||||||||||| || | |||||||| |||||||||||||
Sbjct 4049 AACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 4108
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4109 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 4168
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4169 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 4228
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 4229 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 4287
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 4288 ACGAAAGTTAGGGG 4301
>seq4
Length=251
Score = 122 bits (134), Expect = 2e-25
Identities = 125/161 (78%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 162 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 103
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | || | || || |||||| | ||| || ||||||||
Sbjct 102 GGGATAACATCATAGGA-TTTCGATCCTTTTATGTTGGCCTTCGGGATCGGAGTAATGAT 44
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAG 231
||| ||||| ||||||||| | ||||| || |||||||
Sbjct 43 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAG 3
>seq18
Length=523042
Score = 78.8 bits (86), Expect = 2e-12
Identities = 70/88 (80%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCA 68
|||||||||||||||| |||| ||| || ||||||||| |||||||| | |||| ||
Sbjct 156749 CCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTTGCTGGGTGTAGCAGGGAAACA 156808
Query 69 GGACTTTTACTTTGAAAAAATTAGAGTG 96
||||||| ||| |||| ||| ||||
Sbjct 156809 GGACTTTGACTGCGAAAGGATTTCAGTG 156836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915199039040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |