Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10]
105 sequences; 42,707,783 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq19 717 0.0
seq102 170 8e-40
seq12 82.4 3e-13
>seq19
Length=7974
Score = 717 bits (794), Expect = 0.0
Identities = 563/664 (85%), Gaps = 12/664 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 5827 TGTAAAGTTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 5886
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5887 GTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 5946
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 5947 TGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTT 6006
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAAC-CGGCCCCTCGGCCGGTGCACTCTTCTGCGG 261
|||||||||| | ||| ||| | || ||| || ||||||| ||| |
Sbjct 6007 ATGACCAGACTTGGACTTGGTTAATCATCTGGGGTTCTC-CCCAGTGCACTTTTC-CAGT 6064
Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321
||||||||||||||| | || | |||||||||| ||||||||| || | |||||||
Sbjct 6065 TCAGGCCAGCATCAGTTTTCGCCGGGGGATAAAGGCTTCGGGAATGTAGCTCTCTTCGGG 6124
Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTG-GACTGAGGTCCGCGCTCCGGCTA 380
| ||||||||||||| ||| ||| | || | | ||||||||| |||||| | || |
Sbjct 6125 GAGTGTTATAGCCCGTTGTGTAATAC--CCTGGTGGAGACTGAGGTTCGCGCTTCTGCAA 6182
Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440
|||||||||||||||||| | | || ||||||||| |||||||||||||||||| |
Sbjct 6183 GGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCT 6241
Query 441 TC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
|| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| ||
Sbjct 6242 TCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 6301
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
| || ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 6302 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 6357
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 6358 TACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAAC 6417
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||
Sbjct 6418 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGGG 6477
Query 680 GCGA 683
||||
Sbjct 6478 GCGA 6481
>seq102
Length=523
Score = 170 bits (188), Expect = 8e-40
Identities = 132/157 (84%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586
|||||| | | || || || |||| |||||| |||| |||||||||||||||||||
Sbjct 3 CCTGATCTTCTGAGAAGGGTTCGAGTGGGAGCATGCCTGTCGGGACCCGAAAGATGGTGA 62
Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646
||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | |||
Sbjct 63 ACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGA 122
Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||||||| ||||| | ||||||||||||||||
Sbjct 123 CGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 159
>seq12
Length=271
Score = 82.4 bits (90), Expect = 3e-13
Identities = 109/148 (74%), Gaps = 5/148 (3%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 145 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 86
Query 464 AACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| ||| || ||| ||| ||||||| ||| | ||||||||| ||||
Sbjct 85 AACCCGTAAAGCGCAAGGAAGCTGA---TTGGTGGGATCCCTCGCGGGTGCACCGCCGAC 29
Query 523 CGATCCTGATGTCTTCGGATGGATTTGA 550
||| | |||| | || || || || ||
Sbjct 28 CGACCTTGATCTTTTGAGAAGGGTTCGA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079997747750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |