Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10]
105 sequences; 42,707,783 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq19 443 4e-122
seq1 150 3e-34
seq96 131 3e-28
>seq19
Length=7974
Score = 443 bits (490), Expect = 4e-122
Identities = 284/309 (92%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 4637 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 4696
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4697 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 4756
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| |||
Sbjct 4757 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 4814
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4815 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 4874
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 4875 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 4934
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 4935 CCCTTTGTA 4943
>seq1
Length=1290987
Score = 150 bits (166), Expect = 3e-34
Identities = 141/179 (79%), Gaps = 8/179 (4%)
Strand=Plus/Plus
Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159
|||||||||||| |||||||||||||||| ||||||||| ||||||| || |||||
Sbjct 853223 GATGGAAGTTTGTGGCAATAACAGGTCTGCGATGCCCTTGTGTGTTCTGAGCAGCACGAA 853282
Query 160 CGCTACACTGACAGA---GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216
| || | || | | | | ||| ||| | | | || |||||| |||||||||
Sbjct 853283 CACTGGAATGGCGGGCTTGACGGCGACTTCTTTATC-----CGAAAGGTCCGGGTAATCT 853337
Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275
|||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 853338 TGTTAAACTCCGTCATGAAGGGGATAGAGCATTGCAGTTATTGCTCTTCAACGAGGAAT 853396
>seq96
Length=4151235
Score = 131 bits (144), Expect = 3e-28
Identities = 101/119 (85%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167
|| ||||||| || ||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 528291 TTCGAGGCAACAAGAGGTCTGTGGTGCCCTTAGATGTTCTGGCCCGCACGCGCGCGGCAC 528232
Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226
|||| |||||| |||| | |||| || || ||||||||| ||||||||||||||||
Sbjct 528231 TGACGGAGCCAGTGAGTACTTCAC--TGTCCAAAAGGTCTGGCTAATCTTGTTAAACTC 528175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947199005440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |