Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10]
105 sequences; 42,707,783 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq19 228 1e-57
seq86 75.2 2e-11
>seq19
Length=7974
Score = 228 bits (252), Expect = 1e-57
Identities = 224/282 (79%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 591 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 648
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 708
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | |||||||| ||||| |
Sbjct 709 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAGGCCTCGGCTTAGCGT 766
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|||||||||| | | |||| || |||||| | | | | | | ||| ||
Sbjct 767 CTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGTGTCGTGGT-ATTTCGCGTAT 820
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||| | || | || ||| ||||||||||||||||||
Sbjct 821 TGTAATTTTAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 862
>seq86
Length=286929
Score = 75.2 bits (82), Expect = 2e-11
Identities = 63/75 (84%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || || |||||||||||| | ||||||| |||| || |||
Sbjct 183847 GTACGAGAGGAACCGCTGATTTTG--ATAATTGGTTTTGG-GGCTGTCAGACCGGGTAGT 183903
Query 61 GCCGCGAAGCTACCA 75
|| ||||||||||||
Sbjct 183904 GCGGCGAAGCTACCA 183918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199166720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |