Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq9186 394 1e-107
seq3 212 9e-53
seq18870 118 2e-24
seq20750 82.4 1e-13
>seq9186
Length=448
Score = 394 bits (436), Expect = 1e-107
Identities = 242/254 (95%), Gaps = 3/254 (1%)
Strand=Plus/Plus
Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 44 ACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCT 101
Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACC 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACC 161
Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182
||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 162 CGGGCCTGTCGGCCAAGGCTATAAGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 221
Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 222 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGC 281
Query 243 CAT-CTCCCTCGAA 255
| | |||||| ||
Sbjct 282 CGTAGTCCCTCTAA 295
>seq3
Length=8137
Score = 212 bits (234), Expect = 9e-53
Identities = 173/205 (84%), Gaps = 5/205 (2%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || ||||||| |||| |||||| ||||||||||| ||| ||
Sbjct 3266 TACAAAGGGCAGGGACATAATCAACGCAAGCTA-ATGACTTACGCTTACTAGGGATT-CC 3209
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
|| || |||| ||| |||| ||||| |||||||||| ||||| | | ||| | |||||||
Sbjct 3208 TCATTAAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATTA 3149
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| ||| |||||||||| | || |||| || | | ||||||||||||||||||||
Sbjct 3148 CCCGGGCCTTTCGGCCAAGGAGGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGG 3091
Query 181 CCCAGAACATCTAAGGGCATCACAG 205
|||||||||||||||||||||||||
Sbjct 3090 CCCAGAACATCTAAGGGCATCACAG 3066
>seq18870
Length=223
Score = 118 bits (130), Expect = 2e-24
Identities = 103/126 (82%), Gaps = 3/126 (2%)
Strand=Plus/Plus
Query 81 GCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAG 139
||| || ||| ||||| ||||| | | ||| | |||||||||||| ||| |||||||||
Sbjct 1 GCAGTGCGCTACCCCCAGCACGACGGAGTTTAACAAGATTACCCGGGCCTTTCGGCCAAG 60
Query 140 GTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199
| | || |||| || | ||||||| ||||||||||||||||||||||||||||||| |
Sbjct 61 GAGGTA--CTCGCTGGCTCCATCAGTATAGCGCGCGTGCGGCCCAGAACATCTAAGGGTA 118
Query 200 TCACAG 205
||| ||
Sbjct 119 TCATAG 124
>seq20750
Length=245
Score = 82.4 bits (90), Expect = 1e-13
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751838061735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |