Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3 473 2e-131
seq8720 233 4e-59
seq382 215 9e-54
seq1994 150 3e-34
seq1112 113 8e-23
>seq3
Length=8137
Score = 473 bits (524), Expect = 2e-131
Identities = 294/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 1471 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 1530
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||| |||||||||||||||| || | |||||||| |||||||||||||
Sbjct 1531 AACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 1590
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1591 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 1650
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1651 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 1710
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1711 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 1769
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 1770 ACGAAAGTTAGGGG 1783
>seq8720
Length=885
Score = 233 bits (258), Expect = 4e-59
Identities = 203/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 442 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 383
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 382 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 324
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 323 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 264
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 263 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 205
Query 311 GTTAGGGG 318
||| ||||
Sbjct 204 GTTGGGGG 197
>seq382
Length=7672
Score = 215 bits (238), Expect = 9e-54
Identities = 235/311 (76%), Gaps = 1/311 (0%)
Strand=Plus/Minus
Query 8 TCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCC 67
||||||||||||||||| ||| | || || ||||||||| ||| | ||||||
Sbjct 4526 TCCGGCCGGGCCTTTCCCTCTATAAAACCTTATACCCTTCACTAGGTATAGCGGGGAAAT 4467
Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127
|||||||||| | | ||||||||| ||| | | | |||||| | ||| |||| ||||
Sbjct 4466 AGGACTTTTATTATAAAAAAATTAAAGTACTTTAGGTAGGCCTATACTCAAATATATTAA 4407
Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187
|| |||||||||||||||| | |||||||||| || |||||||||| | ||||
Sbjct 4406 TATAGAATAATAGAATAGGATATATAGTTCTATTTTATTAGTTTCTAGGATTACTATAAT 4347
Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247
||||||||||||| | ||||| | | |||| |||| | |||||| |||||||| | ||
Sbjct 4346 AATTAATAGGGATAATTAGGGGTATTAATATTTAATTATTAGAGGTAAAATTCTTAGGTT 4287
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307
|||| |||| ||| || | |||| || || |||||| |||| |||||| | |||
Sbjct 4286 TATTAAAGATTAATTATTATAAAAGTATTTACTAAGGATATTTTTATTAATTA-AGAATA 4228
Query 308 AAAGTTAGGGG 318
|||||||||||
Sbjct 4227 AAAGTTAGGGG 4217
>seq1994
Length=4706
Score = 150 bits (166), Expect = 3e-34
Identities = 216/303 (71%), Gaps = 1/303 (0%)
Strand=Plus/Minus
Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75
||||||||| | | || || || ||||| | | ||| | |||| ||||||||
Sbjct 2273 GGCCTTTCCCTTTATAGAACCTTATACCCTTTATTAGGTATAGTAGGGAAATAGGACTTT 2214
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135
|| | | |||| |||| ||| || | | |||||| | || |||| |||| || ||||
Sbjct 2213 TATTATAAAAATATTAAAGTATTTTAGGTAGGCCTATACTTAAATATATTAATATAGAAT 2154
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
|||| |||| || | ||||||||| | |||||| ||| || |||| |||||||
Sbjct 2153 AATAAAATAAGATATATAATTCTATTTTATGAATTTCTAAGACTGCTATAATAATTAATA 2094
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
|||||| | ||||| | | |||| |||| | |||||| |||||||| ||||||| |||
Sbjct 2093 GGGATAATTAGGGGTATTAATATTTAATTATTAGAGGTAAAATTCTTAAATTTATTAAAG 2034
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
| ||| || | |||| || || |||||| |||| |||||| | ||| ||| |||
Sbjct 2033 ATTAATTATTATAAAAGTATTTACTAAGGATATTTTTATTAATTA-AGAATAAAAATTAA 1975
Query 316 GGG 318
|||
Sbjct 1974 GGG 1972
>seq1112
Length=4684
Score = 113 bits (124), Expect = 8e-23
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
||| |||||| || |||||||| | | |||| ||||||||||||| | ||||| |
Sbjct 2283 GTTTTATTTTATTAGTTTCTAGTATTACTATAATAATTAATAGGGATAATTAGGGGTATT 2224
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
| |||| |||| | |||| | |||||||| |||||||| |||| |||||||| ||||
Sbjct 2223 AATATTTAATTATTAGAGATAAAATTCTTAGATTTATTAAAGATTAACTACTATAAAAGT 2164
Query 274 GTTCACCAAGGATGTTTTCATTAAT 298
|| || |||||| |||| ||||||
Sbjct 2163 ATTTACTAAGGATATTTTTATTAAT 2139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914996560192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |