Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq9186 297 3e-78 seq3 262 6e-68 seq382 159 6e-37 seq20750 141 1e-31 seq18870 86.0 1e-14 seq1994 84.2 3e-14 >seq9186 Length=448 Score = 297 bits (328), Expect = 3e-78 Identities = 222/258 (86%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 246 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||| | || ||| | ||||||||||||||||| ||| Sbjct 247 CTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCG 306 Query 123 CCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || ||| || |||| |||||||| | ||||||||||||||| |||||||| Sbjct 307 CGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTA 366 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 426 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| ||| |||||| Sbjct 427 AAGAGCTCTCAGTCTGTC 444 >seq3 Length=8137 Score = 262 bits (290), Expect = 6e-68 Identities = 180/199 (90%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 2633 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 2575 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 2574 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 2516 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 2515 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 2456 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 2455 AAAGAGCTCTCAATCTGTC 2437 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3125 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 3066 >seq382 Length=7672 Score = 159 bits (176), Expect = 6e-37 Identities = 190/255 (75%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| | |||| | | | |||||| | ||||| |||| ||||||||| || | || Sbjct 3308 TACTCACTAGCTCTATTAATATAGCGCATATACGGCCTAGAATATCTAAGGGTATTATAG 3367 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||| ||||||| ||| ||| |||| |||| |||||||||||||| || Sbjct 3368 ACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGT 3426 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| ||||||||| |||||||||||| |||||||||| ||||| Sbjct 3427 ATACTACTAAAGTAATATAGGCTATTTAATAGGTTAAGGTCTTATTCGTTATCGCAATTA 3486 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||| |||| |||| | |||||| |||||| || | | ||| ||| ||| |||| Sbjct 3487 AGTAGATAAATTACTCTATTAACTAA-AACGGCTATATATTATTACCTATAAAATTAAGA 3545 Query 241 AAGAGCTATCAATCT 255 ||||||| | ||||| Sbjct 3546 AAGAGCTCTTAATCT 3560 >seq20750 Length=245 Score = 141 bits (156), Expect = 1e-31 Identities = 108/124 (87%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| Sbjct 245 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTG-AGCCG 187 Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT-GGGGCTATTTAGCAGGTTAA 157 |||||||||||||||||||||| | ||| || | || || |||||||| ||||||| Sbjct 186 ATAGTCCCTCTAAGAAGCCAGCGTACTGCCAAAG-CAATACGGACTATTTAGTAGGTTAA 128 Query 158 GGTC 161 |||| Sbjct 127 GGTC 124 >seq18870 Length=223 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||| || Sbjct 65 TACTCGCTGGCTCCATCAGTATAGCGCGCGTGCGGCCCAGAACATCTAAGGGTATCATAG 124 >seq1994 Length=4706 Score = 84.2 bits (92), Expect = 3e-14 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| ||| ||| ||| ||| |||| |||| ||||| ||||||| | Sbjct 1127 TTATTACCTTAAATTTCTATTAGCTT-AAGCTAATAATCCCTTTAAGAAGTTAATATATT 1185 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| |||||||||| | |||||||||| || |||| |||||| || Sbjct 1186 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAG 1245 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| |||| | || |||||| || || | ||| ||| ||| ||| ||||||||| Sbjct 1246 ATAAATTACTCTATTAATTAAGAATAGCTATATATCACTACCTATAAAATTAAGAAAGAG 1305 Query 246 CTATCAAT 253 || | ||| Sbjct 1306 CTCTTAAT 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796628414349