Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq9186 297 3e-78
seq3 262 6e-68
seq382 159 6e-37
seq20750 141 1e-31
seq18870 86.0 1e-14
seq1994 84.2 3e-14
>seq9186
Length=448
Score = 297 bits (328), Expect = 3e-78
Identities = 222/258 (86%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62
|||| || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 246
Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122
||||||||||||||||||||| | || ||| | ||||||||||||||||| |||
Sbjct 247 CTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCG 306
Query 123 CCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || ||| || |||| |||||||| | ||||||||||||||| ||||||||
Sbjct 307 CGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTA 366
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 426
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||| ||||||
Sbjct 427 AAGAGCTCTCAGTCTGTC 444
>seq3
Length=8137
Score = 262 bits (290), Expect = 6e-68
Identities = 180/199 (90%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||
Sbjct 2633 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 2575
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2574 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 2516
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2515 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 2456
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 2455 AAAGAGCTCTCAATCTGTC 2437
Score = 104 bits (114), Expect = 4e-20
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3125 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 3066
>seq382
Length=7672
Score = 159 bits (176), Expect = 6e-37
Identities = 190/255 (75%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
||||| | |||| | | | |||||| | ||||| |||| ||||||||| || | ||
Sbjct 3308 TACTCACTAGCTCTATTAATATAGCGCATATACGGCCTAGAATATCTAAGGGTATTATAG 3367
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||| ||||||| ||| ||| |||| |||| |||||||||||||| ||
Sbjct 3368 ACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGT 3426
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| ||||||||| |||||||||||| |||||||||| |||||
Sbjct 3427 ATACTACTAAAGTAATATAGGCTATTTAATAGGTTAAGGTCTTATTCGTTATCGCAATTA 3486
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||| |||| |||| | |||||| |||||| || | | ||| ||| ||| ||||
Sbjct 3487 AGTAGATAAATTACTCTATTAACTAA-AACGGCTATATATTATTACCTATAAAATTAAGA 3545
Query 241 AAGAGCTATCAATCT 255
||||||| | |||||
Sbjct 3546 AAGAGCTCTTAATCT 3560
>seq20750
Length=245
Score = 141 bits (156), Expect = 1e-31
Identities = 108/124 (87%), Gaps = 3/124 (2%)
Strand=Plus/Minus
Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98
||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 245 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTG-AGCCG 187
Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT-GGGGCTATTTAGCAGGTTAA 157
|||||||||||||||||||||| | ||| || | || || |||||||| |||||||
Sbjct 186 ATAGTCCCTCTAAGAAGCCAGCGTACTGCCAAAG-CAATACGGACTATTTAGTAGGTTAA 128
Query 158 GGTC 161
||||
Sbjct 127 GGTC 124
>seq18870
Length=223
Score = 86.0 bits (94), Expect = 1e-14
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 65 TACTCGCTGGCTCCATCAGTATAGCGCGCGTGCGGCCCAGAACATCTAAGGGTATCATAG 124
>seq1994
Length=4706
Score = 84.2 bits (92), Expect = 3e-14
Identities = 132/188 (70%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| ||| ||| ||| ||| |||| |||| ||||| ||||||| |
Sbjct 1127 TTATTACCTTAAATTTCTATTAGCTT-AAGCTAATAATCCCTTTAAGAAGTTAATATATT 1185
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| |||||||||| | |||||||||| || |||| |||||| ||
Sbjct 1186 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAG 1245
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| |||| | || |||||| || || | ||| ||| ||| ||| |||||||||
Sbjct 1246 ATAAATTACTCTATTAATTAAGAATAGCTATATATCACTACCTATAAAATTAAGAAAGAG 1305
Query 246 CTATCAAT 253
|| | |||
Sbjct 1306 CTCTTAAT 1313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796628414349
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |