Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq9186 302 9e-80
seq3 269 5e-70
seq20750 170 4e-40
seq382 154 3e-35
seq18870 149 1e-33
>seq9186
Length=448
Score = 302 bits (334), Expect = 9e-80
Identities = 260/317 (82%), Gaps = 16/317 (5%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG------CTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | || |||| || |||
Sbjct 353 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGG----CCAGCT 298
Query 74 TCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| |||| | | |||| ||||||||||||||||||||||||||||
Sbjct 297 TCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGTG 240
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||||||||||||||| | ||||||| | ||
Sbjct 239 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGCTTATAG 180
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||
Sbjct 179 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 121
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |
Sbjct 120 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 61
Query 311 ACGTCCCTGCCCTTTGT 327
|||||||||||||||||
Sbjct 60 ACGTCCCTGCCCTTTGT 44
>seq3
Length=8137
Score = 269 bits (298), Expect = 5e-70
Identities = 182/203 (90%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 3066 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 3125
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||| |||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 3126 CCTC--CTTGGCCGAAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 3183
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
||||| ||||||||||||| || ||||||| ||||||||||| ||||| ||| ||||
Sbjct 3184 CATTGTAATTATTGCTCTTTAATGAGGAATCCCTAGTAAGCGTAAGTCATTAGCTTGCGT 3243
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||| ||||||||||||||||
Sbjct 3244 TGATTATGTCCCTGCCCTTTGTA 3266
Score = 147 bits (162), Expect = 4e-33
Identities = 96/106 (91%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 2528 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 2587
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2588 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 2633
>seq20750
Length=245
Score = 170 bits (188), Expect = 4e-40
Identities = 111/122 (91%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 26 GACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGAC 85
||||||||||| |||||||| | | |||||||| | ||| ||||||||||||||||
Sbjct 124 GACCTTAACCTACTAAATAGTCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAGAGGGAC 183
Query 86 TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTT 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTT 243
Query 146 CT 147
||
Sbjct 244 CT 245
>seq382
Length=7672
Score = 154 bits (170), Expect = 3e-35
Identities = 217/304 (71%), Gaps = 2/304 (1%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| ||||||||| |||| | | | ||||||||||||||
Sbjct 3468 AGACCTTAACCTATTAAATAGCCTATATTACTTTAGTAGTATACTAGCTTCTTAGAGGGA 3409
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| |
Sbjct 3408 TTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 3349
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||||| | |||||| | | | ||||| | |||| | | | || || ||||
Sbjct 3348 TCTAGGCCGTATATGCGCTATATTAATAGAGCTAGTGAGT--ACCTCTTTAGCTAAAAGG 3291
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||| || || | | ||||||||| ||| ||||||| |||||
Sbjct 3290 CCTAGGTAATCTTATTAAATTCCGTTATATTAGGGATAGAGTATTATAATTATTACTCTT 3231
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| ||||||||| || || ||| || |||| |||||||||||
Sbjct 3230 TAATAAGGAATCCCTAGTAAGTATAAGTTATTAGCTTATATTAATTATATCCCTGCCCTT 3171
Query 325 TGTA 328
| ||
Sbjct 3170 TATA 3167
>seq18870
Length=223
Score = 149 bits (164), Expect = 1e-33
Identities = 109/126 (87%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|| |||| ||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 124 CTATGATACCCTTAGATGTTCTGGGCCGCACGCGCGCTATACTGATGGAGCCAGCGAGT- 66
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| | ||||||||| |||| | ||||||||||||||||||| |||||||||||| ||| |
Sbjct 65 -ACCTCCTTGGCCGAAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGGTAGCG 7
Query 246 CATTGC 251
|| |||
Sbjct 6 CACTGC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946989446912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |