Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9186 302 9e-80 seq3 269 5e-70 seq20750 170 4e-40 seq382 154 3e-35 seq18870 149 1e-33 >seq9186 Length=448 Score = 302 bits (334), Expect = 9e-80 Identities = 260/317 (82%), Gaps = 16/317 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG------CTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | || |||| || ||| Sbjct 353 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGG----CCAGCT 298 Query 74 TCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| | | |||| |||||||||||||||||||||||||||| Sbjct 297 TCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGTG 240 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| | ||||||| | || Sbjct 239 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGCTTATAG 180 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 179 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 121 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 120 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 61 Query 311 ACGTCCCTGCCCTTTGT 327 ||||||||||||||||| Sbjct 60 ACGTCCCTGCCCTTTGT 44 >seq3 Length=8137 Score = 269 bits (298), Expect = 5e-70 Identities = 182/203 (90%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 3066 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 3125 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||||||| |||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 3126 CCTC--CTTGGCCGAAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 3183 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||||| ||||||||||||| || ||||||| ||||||||||| ||||| ||| |||| Sbjct 3184 CATTGTAATTATTGCTCTTTAATGAGGAATCCCTAGTAAGCGTAAGTCATTAGCTTGCGT 3243 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 |||||| |||||||||||||||| Sbjct 3244 TGATTATGTCCCTGCCCTTTGTA 3266 Score = 147 bits (162), Expect = 4e-33 Identities = 96/106 (91%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 2528 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 2587 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2588 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 2633 >seq20750 Length=245 Score = 170 bits (188), Expect = 4e-40 Identities = 111/122 (91%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 26 GACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGAC 85 ||||||||||| |||||||| | | |||||||| | ||| |||||||||||||||| Sbjct 124 GACCTTAACCTACTAAATAGTCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAGAGGGAC 183 Query 86 TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTT 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTT 243 Query 146 CT 147 || Sbjct 244 CT 245 >seq382 Length=7672 Score = 154 bits (170), Expect = 3e-35 Identities = 217/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| ||||||||| |||| | | | |||||||||||||| Sbjct 3468 AGACCTTAACCTATTAAATAGCCTATATTACTTTAGTAGTATACTAGCTTCTTAGAGGGA 3409 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 ||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| | Sbjct 3408 TTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 3349 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||||| | |||||| | | | ||||| | |||| | | | || || |||| Sbjct 3348 TCTAGGCCGTATATGCGCTATATTAATAGAGCTAGTGAGT--ACCTCTTTAGCTAAAAGG 3291 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||| || || | | ||||||||| ||| ||||||| ||||| Sbjct 3290 CCTAGGTAATCTTATTAAATTCCGTTATATTAGGGATAGAGTATTATAATTATTACTCTT 3231 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||| || || ||| || |||| ||||||||||| Sbjct 3230 TAATAAGGAATCCCTAGTAAGTATAAGTTATTAGCTTATATTAATTATATCCCTGCCCTT 3171 Query 325 TGTA 328 | || Sbjct 3170 TATA 3167 >seq18870 Length=223 Score = 149 bits (164), Expect = 1e-33 Identities = 109/126 (87%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || |||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 124 CTATGATACCCTTAGATGTTCTGGGCCGCACGCGCGCTATACTGATGGAGCCAGCGAGT- 66 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | | ||||||||| |||| | ||||||||||||||||||| |||||||||||| ||| | Sbjct 65 -ACCTCCTTGGCCGAAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGGTAGCG 7 Query 246 CATTGC 251 || ||| Sbjct 6 CACTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946989446912