Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6 233 3e-59 seq3 168 1e-39 seq8047 165 1e-38 >seq6 Length=2580 Score = 233 bits (258), Expect = 3e-59 Identities = 225/282 (80%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1682 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1739 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1740 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1799 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | || ||| | |||||||| ||||| | Sbjct 1800 GAACGCGGTGATAC-CACCCGCACGT-ACAGATGGACAAGAATAGGCCTCGGCTTAGCGT 1857 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | |||| || |||||||| | | | | | ||| || Sbjct 1858 CTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 1911 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| |||||||||||||||||| Sbjct 1912 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 1953 >seq3 Length=8137 Score = 168 bits (186), Expect = 1e-39 Identities = 154/189 (81%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||||| |||||||| ||||| |||||||||||| || |||| |||||| Sbjct 7284 TACGAGAGGAACCGCT-AATTCAGA-TAATTAGTTTTTGCGGCTATCCGACCGGGCAGTA 7341 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||| || ||| || ||| ||||||||||||||||||||||| |||| Sbjct 7342 CCGCGAAGCTACCATCTACTAGATAATAGCTAAACGCCTCTAAGTCAGAATCCATACCAG 7401 Query 122 AACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACC 181 |||| ||| || | | || |||||| || || | |||||||| ||||| | | Sbjct 7402 AACGCGGTAATAC-CACCCGCACAT-ACAGATAGACAAGAATAGGCCTCGGCTTAGCGTC 7459 Query 182 TTAGCAGGC 190 ||||||||| Sbjct 7460 TTAGCAGGC 7468 >seq8047 Length=1198 Score = 165 bits (182), Expect = 1e-38 Identities = 153/189 (81%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||||| || || ||| ||||| |||||||||||| || |||| || |||| Sbjct 556 TACGAGAGGAACCGCTGATTT-AGA-TAATTAGTTTTTGCGGCTATCCGACCGGGTAGTG 499 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||| |||| || ||| |||||| |||||||||||||||||||| |||| || Sbjct 498 CCGCGAAGCTACTATCTACTAGATAATGGCTAAACGCCTCTAAGTCAGAATCTATGCTAG 439 Query 122 AACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACC 181 |||| ||| || | | || |||| | ||| |||| |||||||| ||||| | | Sbjct 438 AACGCGGTAATAC-CACCCGCACGT-ATAGATAGATAAGAATAGGCCTCGGCTTAGCGTC 381 Query 182 TTAGCAGGC 190 ||||||||| Sbjct 380 TTAGCAGGC 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819023590656