Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq96 275 9e-72 seq2 105 1e-20 >seq96 Length=6529 Score = 275 bits (304), Expect = 9e-72 Identities = 201/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 4267 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 4324 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 4325 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 4384 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 4385 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 4442 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 4443 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTNAAACTTCC 4491 >seq2 Length=2372785 Score = 105 bits (116), Expect = 1e-20 Identities = 111/144 (77%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 82 CAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGG 140 ||||| ||| |||| |||| | ||||| | |||| ||||||||||| |||| |||| Sbjct 1832581 CAATGCTCTCTCCCACGGACGACGGAATTTAACAAGAATACCCGGACCTTTCGGGCAAG- 1832523 Query 141 TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCAT 200 || | ||||| || | ||||||||| |||||||||| | |||| ||||||| |||| Sbjct 1832522 -GAAATACTCGCTGGCTCCATCAGTGTCACGCGCGTGCGATCAAGAATATCTAAGAGCAT 1832464 Query 201 CACAGACCTGTTATTGCCTCAAAC 224 | ||||||||| || || ||||| Sbjct 1832463 CCCAGACCTGTATTTTCCCCAAAC 1832440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996882020