Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq5 354 1e-95
seq3812 199 7e-49
seq6 145 1e-32
seq2872 125 1e-26
>seq5
Length=1500
Score = 354 bits (392), Expect = 1e-95
Identities = 201/204 (99%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1154
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1153 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1094
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1093 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGC 1034
Query 272 CACACTTTCATGGTTTGTATTCAC 295
||||||||||||||||||||||||
Sbjct 1033 CACACTTTCATGGTTTGTATTCAC 1010
>seq3812
Length=5000
Score = 199 bits (220), Expect = 7e-49
Identities = 163/198 (82%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156
||| ||||||| ||||||||||||||||| ||| |||| ||| |||||||||| || |
Sbjct 2795 GGTAAACAATCTAACGCTTACCGAATTCTACTTTAGTATAATAAGAAGAGCCGATATTAA 2736
Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216
||||| ||||||| | | |||| ||||||| || || | |||| |||||||||| |
Sbjct 2735 AGGATTAAAAAGCGATATTACTATAAACGCTTAGCCGCTATAAGCTAGTTATCCCTATAA 2676
Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276
|||||||||| ||||||||||||| |||| || | |||||||||||||||||||| | ||
Sbjct 2675 TAACTTTTCTAGCACCTCTAGCCTTAAATATCAAAGGACTAAAGGATCGATAGGCTATAC 2616
Query 277 TTTCATGGTTTGTATTCA 294
||| || |||| ||||||
Sbjct 2615 TTTTATAGTTTATATTCA 2598
Score = 109 bits (120), Expect = 9e-22
Identities = 80/92 (87%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| ||||| |||||||| |||||||||| |||||| |||||
Sbjct 3249 TACTAAGCTAAATTACTATTACGGCGA-GGTCATCAATAGGGTAAAATTAACCTATCTCA 3191
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||| |||| || |||||||||
Sbjct 3190 TGACGGTCTAAACCTAGCTTACATTCCCTATT 3159
>seq6
Length=1187
Score = 145 bits (160), Expect = 1e-32
Identities = 88/92 (96%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 970 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1028
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 1029 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 1060
>seq2872
Length=5843
Score = 125 bits (138), Expect = 1e-26
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACTAAAGGATC 264
|||||||||||||||||||||||||||||||||||| || | | ||||||||||||||
Sbjct 3858 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAGATGTTGCCGGGGACTAAAGGATC 3799
Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||| |||||||||||||||||| |||||||
Sbjct 3798 GATAAGCCACACTTTCATGGTTTATATTCAC 3768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854240295552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |