Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5 354 1e-95 seq3812 199 7e-49 seq6 145 1e-32 seq2872 125 1e-26 >seq5 Length=1500 Score = 354 bits (392), Expect = 1e-95 Identities = 201/204 (99%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1154 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1153 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1094 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1093 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGC 1034 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 1033 CACACTTTCATGGTTTGTATTCAC 1010 >seq3812 Length=5000 Score = 199 bits (220), Expect = 7e-49 Identities = 163/198 (82%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||| ||||||| ||||||||||||||||| ||| |||| ||| |||||||||| || | Sbjct 2795 GGTAAACAATCTAACGCTTACCGAATTCTACTTTAGTATAATAAGAAGAGCCGATATTAA 2736 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||| ||||||| | | |||| ||||||| || || | |||| |||||||||| | Sbjct 2735 AGGATTAAAAAGCGATATTACTATAAACGCTTAGCCGCTATAAGCTAGTTATCCCTATAA 2676 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 |||||||||| ||||||||||||| |||| || | |||||||||||||||||||| | || Sbjct 2675 TAACTTTTCTAGCACCTCTAGCCTTAAATATCAAAGGACTAAAGGATCGATAGGCTATAC 2616 Query 277 TTTCATGGTTTGTATTCA 294 ||| || |||| |||||| Sbjct 2615 TTTTATAGTTTATATTCA 2598 Score = 109 bits (120), Expect = 9e-22 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| ||||| |||||||| |||||||||| |||||| ||||| Sbjct 3249 TACTAAGCTAAATTACTATTACGGCGA-GGTCATCAATAGGGTAAAATTAACCTATCTCA 3191 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||| |||| || ||||||||| Sbjct 3190 TGACGGTCTAAACCTAGCTTACATTCCCTATT 3159 >seq6 Length=1187 Score = 145 bits (160), Expect = 1e-32 Identities = 88/92 (96%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 970 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1028 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 1029 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 1060 >seq2872 Length=5843 Score = 125 bits (138), Expect = 1e-26 Identities = 83/91 (91%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACTAAAGGATC 264 |||||||||||||||||||||||||||||||||||| || | | |||||||||||||| Sbjct 3858 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAGATGTTGCCGGGGACTAAAGGATC 3799 Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||| |||||||||||||||||| ||||||| Sbjct 3798 GATAAGCCACACTTTCATGGTTTATATTCAC 3768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854240295552