Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq5 623 3e-176
seq3 154 5e-35
seq3812 145 2e-32
seq591 89.7 2e-15
>seq5
Length=1500
Score = 623 bits (690), Expect = 3e-176
Identities = 400/435 (92%), Gaps = 5/435 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 978 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 919
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 918 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 859
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 858 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGA--AAATCCAGCCCCGCTTCATTGA 801
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 800 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 744
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 743 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 684
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 624
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 564
Query 427 TGGCTACCTTAAGAG 441
|||||||||||||||
Sbjct 563 TGGCTACCTTAAGAG 549
Score = 140 bits (154), Expect = 1e-30
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTGGGCA 60
Query 514 GAAATCACATTGCGTCAACA 533
||||||||||||||||||||
Sbjct 61 GAAATCACATTGCGTCAACA 80
Score = 140 bits (154), Expect = 1e-30
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 161 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 102
Query 501 AGAGCACTGGGCAGAAATCA 520
||||||||||||||||||||
Sbjct 101 AGAGCACTGGGCAGAAATCA 82
>seq3
Length=2799
Score = 154 bits (170), Expect = 5e-35
Identities = 88/90 (98%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTGGGCA 60
Query 514 GAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||||||||||||||| |||||||||
Sbjct 61 GAAATCACATTGCGTCAACACCACTTTCTG 90
>seq3812
Length=5000
Score = 145 bits (160), Expect = 2e-32
Identities = 113/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
|||| | ||| ||||||||| |||||||| || ||||||||||| |||| ||||||
Sbjct 2564 TTTTATTATACTAGAGATTTCTATTCTCCATAAGCCCCCCTTAGGATACCTACGTTATAA 2505
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||||| |||| | |||||||||| ||||||||||||| | ||| || ||||||||| ||
Sbjct 2504 TTTAATAGATATACCGCCCCAGCTAAACTCCCCACCTAATAATATCTTCAACCCGGGTCA 2445
Query 128 GCCCGCGAAGGACCT 142
|||||||||||||||
Sbjct 2444 GCCCGCGAAGGACCT 2430
>seq591
Length=15734
Score = 89.7 bits (98), Expect = 2e-15
Identities = 75/92 (82%), Gaps = 4/92 (4%)
Strand=Plus/Minus
Query 6 TCTTTTGCTCTACA----GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCG 61
||||||| |||||| | |||||||||||||| |||| |||| ||||||||||||||
Sbjct 751 TCTTTTGTTCTACATATGGAAGATTTCTGTTCTCGATGAACCCCCTTTAGGACACCTGCG 692
Query 62 TTATGGTTTAACAGATGTGCCGCCCCAGCCAA 93
|||| |||| | |||| | |||| |||||||
Sbjct 691 TTATAGTTTGATAGATTTATCGCCTCAGCCAA 660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634894348416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |