Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023045.1_202015-06-09] 835 sequences; 43,096,072 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq72 693 0.0 seq718 78.8 4e-12 >seq72 Length=2094 Score = 693 bits (768), Expect = 0.0 Identities = 559/665 (84%), Gaps = 13/665 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTC-GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAA 81 ||| ||| |||||| |||||||||||| |||||||||||| ||||||||||||||||| | Sbjct 1071 TGTAAAGTTCCTTCCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATA 1012 Query 82 TTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1011 TGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 952 Query 142 ATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCT 201 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | Sbjct 951 ATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTT 892 Query 202 TGCAACCAGACTTGCCCGCAGTTGCTCAAC-CGGCCCCTCGGCCGGTGCACTCTTCTGCG 260 | |||||||||| | ||| ||| | || ||| || ||||||| ||| | Sbjct 891 TATGACCAGACTTGGGCTTGGTTAATCATCTGGGGTTCTC-CCCAGTGCACTTTTC--CA 835 Query 261 GT-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 || |||||||||||||| | | | |||||||| | |||||||||||| | ||||| Sbjct 834 GTCCAGGCCAGCATCAGTTTTCCCCGGGGGATAAAGACTTCGGGAATGTGGCTCTCTTCG 775 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| ||||||||||||| ||| ||| | | | |||||||||| ||||| | || Sbjct 774 GGGAGTGTTATAGCCCGTTGTGTAATAC-CCTGGGGGGGACTGAGGTTCGCGCATCTGCA 716 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||| | | || ||||||||| |||||||||||||||||| | Sbjct 715 AGGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTC-GTC 657 Query 440 ATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| | Sbjct 656 TTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAG 597 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | || ||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 596 A----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGC 541 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| | |||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 540 ATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAA 481 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || || Sbjct 480 CTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGG 421 Query 679 GGCGA 683 ||||| Sbjct 420 GGCGA 416 >seq718 Length=342138 Score = 78.8 bits (86), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 7/147 (5%) Strand=Plus/Minus Query 449 AGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAG 508 |||||| || |||||||||| ||| | || |||||| || || || | Sbjct 218314 AGTGTTCGGATGTCAAACCCCGATACGTGAAGAC--TGAACGCAGATGAGAGCTTC---- 218261 Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTG 568 || ||| |||||||||||| |||||| | |||| |||||||| ||||||| | || | Sbjct 218260 GGCGCATCATCGACCGATCTTGATGTTCTAGGATAGATTTGAGGAAGAGCACACGTG-TC 218202 Query 569 GGACCCGAAAGATGGTGAACTATGCCT 595 |||||||| ||| ||| |||| ||||| Sbjct 218201 GGACCCGAGAGAAGGTTAACTGTGCCT 218175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079982089250