Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_032108.1
Length=589068
Score E
Sequences producing significant alignments: (Bits) Value
seq4 93.3 2e-13
seq1 86.0 2e-11
>seq4
Length=7997404
Score = 93.3 bits (102), Expect = 2e-13
Identities = 210/313 (67%), Gaps = 2/313 (1%)
Strand=Plus/Minus
Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793
|||||||| ||| || ||||| || | | ||| || |||||||| | ||||||||||
Sbjct 3595108 ACATCGTAGTAGATGACGTTCATACCCATAGCCTCAGCGAGGACAGACAGCTGAGAACCA 3595049
Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAA 12853
|||| ||| || || || || || | ||||| |||| || || | || || | |||
Sbjct 3595048 ATGTGACCGTAGCCGACAATTCCCAAAGTCTTGCCTCGAATCTCCCAGC-ACTTGGAGCT 3594990
Query 12854 G-TCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAG 12912
| ||||||||| | || |||| | || ||| || || || | ||||| | |||
Sbjct 3594989 GACCTTGTTCCAGGTACCACGGTGCATCTCGTTGGATCGGTCGCCGAGTTGACGGGCAAG 3594930
Query 12913 ATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATT 12972
| || | | | |||| ||||| || || || | | |||| ||||| || ||
Sbjct 3594929 GGTGATGATCTCGGCAATGACAAGCTCAGCGACACTGCGCGAGTTGGCGAAGGGGGAGTT 3594870
Query 12973 AAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCA 13032
||||| || || || |||| || | || || | ||||| | | |||||| ||
Sbjct 3594869 GAAGACGGCGATACCATTCTTGGCGGCAAACTCGAGGTCGACCTGGTTGGTACCAATACA 3594810
Query 13033 GAAGCATCCTATG 13045
|||||| || |||
Sbjct 3594809 GAAGCAGCCGATG 3594797
>seq1
Length=11267849
Score = 86.0 bits (94), Expect = 2e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484
|||| ||||||||||| ||||| | | ||||||||||||| |||||||| || || |
Sbjct 8504788 CAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGATAATGTCAGGAGTCAGACCCT 8504729
Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544
| | | || |||||||| || | || | | | ||| || || |||||||| | |
Sbjct 8504728 CTCTGCTGAAAGGCATATCCTCCTGTCGATAGGTAACACCGATTGTACCCTTTTGACCGT 8504669
Query 364545 AGCGAGAAGCAAACTTGTCGCCAAT 364569
||||| || |||||||| |||||
Sbjct 8504668 GACGAGAGGCGAACTTGTCACCAAT 8504644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1884881594128707
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |