Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq839 269 2e-67 seq700 170 2e-37 >seq839 Length=23613 Score = 269 bits (298), Expect = 2e-67 Identities = 539/795 (68%), Gaps = 3/795 (0%) Strand=Plus/Minus Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068 |||| || || |||||||| ||||| | ||| ||||||||| ||||| | ||| || | Sbjct 13361 CAAG-GAGGCAAGGTTGCAAACAGCGACCTCATCAGGAGCGCAGTACTCAATAATCTCAG 13303 Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 ||||||| || || || ||||| || | |||| ||| || |||||||| ||||| Sbjct 13302 TGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGT 13243 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||||| | |||| | || | || ||||| |||| ||| | ||||| | || Sbjct 13242 GATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACC 13183 Query 66189 AAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAATGTTCGTAG 66247 |||| | ||||| | | || | | |||| ||| | | ||||| | ||||| Sbjct 13182 AAAGCTTCTGAGCCTTGATAG-ACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTAC 13124 Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307 || ||||| ||||| | || | |||| || |||| || || ||||| Sbjct 13123 AGAGCCTCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATA 13064 Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 || | ||| || |||| || || ||||| ||| || |||||||| ||||| ||||| Sbjct 13063 AGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCC 13004 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||| || || || || || |||||| | ||||| || || || | || |||||| Sbjct 13003 AGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAAC 12944 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || |||| ||||| ||||| || || |||||||| ||||| | || || ||| | Sbjct 12943 TCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGTTG 12884 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 ||||| ||||||||||| ||||| |||||||| ||||||| ||| || |||| ||| Sbjct 12883 CCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACCG 12824 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 ||||| | |||||||| ||| | ||| || || || || || ||| || ||| Sbjct 12823 TTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGTTC 12764 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||||||||||| ||| |||| || || |||||| | || | | || Sbjct 12763 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 12704 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 ||||| ||| ||| |||| || | ||| ||||||| || || || | || Sbjct 12703 CCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGG 12644 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 || | || ||| || ||||| | ||| || || ||| | | || ||||||| ||| Sbjct 12643 GTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGTTG 12584 Query 66788 TACGTCTCGATGACA 66802 || ||||| | |||| Sbjct 12583 TATGTCTCCAAGACA 12569 >seq700 Length=246488 Score = 170 bits (188), Expect = 2e-37 Identities = 374/547 (68%), Gaps = 25/547 (5%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| ||||| | Sbjct 27434 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 27493 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGT-GAACAACATTTCATTAA 61202 ||||| || | |||||||| | ||| || | |||| || || | ||||| Sbjct 27494 TCCAAGGATCTCCATGACTGGAACAACCGTCTAACT-GCGGACGAGCAGTACTTCATCTC 27552 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||||||||| || || ||||| ||||| ||||| | | || || Sbjct 27553 CCACATTCTTGCTTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAACCTTGTTGAGCG 27612 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| ||||| || | | ||||| || || |||||||| |||||||| | Sbjct 27613 ATTCAGCG-GCGAGGTTCAGATCCCTGAGGCTCGATGCTTCTACGGTTTCCAGATCATGA 27671 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| || | ||| | | ||||| || || ||||||| ||||| | Sbjct 27672 TGGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGGAGCCTG 27731 Query 61382 CGGAACGTGAAC--GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA-- 61437 | | | |||| | ||||| ||| | || || || || || | | |||| Sbjct 27732 CTCA--GAGAACTTACCTCTTCAACGCCGTTGACACCATTCC----TTGCATCCGAAAGA 27785 Query 61438 --GCGGATTGGGC-CTTCAATTGGATCACCAGTACA--ACGGCTACATTTGGTGAACGAT 61492 || |||||||| ||| | ||||| |||| ||| | || | |||| | || Sbjct 27786 AGGCTGATTGGGCTATTCGA-TGGAT--CCAGGACAAGAACTCTTCCTTTGCCCAGCGTC 27842 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | || ||||| | || |||||| | || ||||| || | ||||| | || || | Sbjct 27843 TTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATTTTCT 27902 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||||||||| ||| || ||| | || || || | Sbjct 27903 GGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTG 27962 Query 61613 ACGAGGG 61619 ||||||| Sbjct 27963 ACGAGGG 27969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560315259040