Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq254 98.7 4e-15 seq159 86.0 2e-11 >seq254 Length=318092 Score = 98.7 bits (108), Expect = 4e-15 Identities = 211/313 (67%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793 |||||||| ||| || |||||||| | | ||| || |||||||| | |||||||||| Sbjct 220782 ACATCGTAGTAGATGACGTTCATGCCCATAGCCTCAGCGAGGACAGACAGCTGAGAACCA 220723 Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAA 12853 |||| ||| || || || || || | ||||| |||| || || | || || | ||| Sbjct 220722 ATGTGACCGTAGCCGACAATTCCCAAAGTCTTGCCTCGAATCTCCCAGC-ACTTGGAGCT 220664 Query 12854 G-TCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAG 12912 | ||||||||| | || |||| | || ||| || || || | ||||| | ||| Sbjct 220663 GACCTTGTTCCAGGTACCACGGTGCATCTCGTTGGATCGGTCGCCGAGTTGACGGGCAAG 220604 Query 12913 ATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATT 12972 | || | | | |||| ||||| || || || | | |||| ||||| || || Sbjct 220603 GGTGATGATCTCGGCAATGACAAGCTCAGCGACACTGCGCGAGTTGGCGAAGGGGGAGTT 220544 Query 12973 AAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCA 13032 ||||| || || || |||| || | || || | ||||| | | |||||| || Sbjct 220543 GAAGACGGCGATACCATTCTTGGCGGCAAACTCGAGGTCGACCTGGTTGGTACCAATACA 220484 Query 13033 GAAGCATCCTATG 13045 |||||| || ||| Sbjct 220483 GAAGCAGCCGATG 220471 >seq159 Length=450870 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||| | | ||||||||||||| |||||||| || || | Sbjct 136275 CAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGATAATGTCAGGAGTCAGACCCT 136216 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544 | | | || |||||||| || | || | | | ||| || || |||||||| | | Sbjct 136215 CTCTGCTGAAAGGCATATCCTCCTGTCGATAGGTAACACCGATTGTACCCTTTTGACCGT 136156 Query 364545 AGCGAGAAGCAAACTTGTCGCCAAT 364569 ||||| || |||||||| ||||| Sbjct 136155 GACGAGAGGCGAACTTGTCACCAAT 136131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884879468919291