Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08]
1,166 sequences; 50,550,233 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1017 277 3e-72
seq4 237 3e-60
>seq1017
Length=583
Score = 277 bits (306), Expect = 3e-72
Identities = 236/283 (83%), Gaps = 10/283 (4%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 455 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 398
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 397 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 338
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTC-GGCCCCGA 178
||||| || |||| || |||| ||||||| ||||||||||||| |||| |||| |
Sbjct 337 GAACGCGGCGATTTCGCCCCGCACGTCGTAGTTGGATACGAATAGGCCTTCGGGCCATGC 278
Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCGG---AAGCGCGGGGCGCTCAGCTGGCGGA 235
|||| ||||||| ||| |||| ||||| || || | ||| ||| ||| |||||
Sbjct 277 ACCTCAGCAGGCTGGCGACGG--CTCCCGGGGAGAAACCCTCGGGAGCT-GGCTAGCGGA 221
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||| ||||| |||| |||||| ||||| ||||||||||
Sbjct 220 TTGTAATGTCACCTCGCGCGGGGATAGATCCTCTGCAGACGAC 178
>seq4
Length=1013304
Score = 237 bits (262), Expect = 3e-60
Identities = 226/282 (80%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 5938 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 5995
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 5996 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6055
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | |||||||||||||| |
Sbjct 6056 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAGGCTTCGGCTTAGCGT 6113
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|||||||||| | | |||| || |||||||| | | | | | ||| ||
Sbjct 6114 CTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 6167
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||||| || | || ||| ||||||||||||||||||
Sbjct 6168 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 6209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819190746624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |