Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27]
1,277 sequences; 50,403,639 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1145 279 8e-73
seq890 98.7 1e-18
>seq1145
Length=7875
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 1068 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 1125
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 1126 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 1185
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 1186 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1243
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1292
>seq890
Length=577872
Score = 98.7 bits (108), Expect = 1e-18
Identities = 116/152 (76%), Gaps = 5/152 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| || ||||| ||||| | |||| || |||| |||||||||||| ||| |
Sbjct 125014 GTACAAAGGGAAGCGACGTGATCAACACAAGCT-GACGACTTGCGCTTACTAGGGATTGC 124956
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||||||| ||| | ||| ||| ||||||| || ||||| | ||| | ||||||
Sbjct 124955 -TCGTTGAAGAGCAATAGTTGAAATACTCTATCCACAGCACGACAGAGTTTAACAAGATT 124897
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCG 151
||| ||||| || ||| ||| | |||||
Sbjct 124896 GCCCTGACCTCCTGGACAA--TGAAACACTCG 124867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751990697055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |