Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27]
1,277 sequences; 50,403,639 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq1145 439 1e-120
>seq1145
Length=7875
Score = 439 bits (486), Expect = 1e-120
Identities = 367/443 (83%), Gaps = 10/443 (2%)
Strand=Plus/Minus
Query 243 CCGGTGCACTCTTCTGCGGTC-AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCG 301
|| ||||||| ||| | ||| ||||||||||||| | | | |||||||||| ||
Sbjct 7857 CCAGTGCACTTTTC--CAGTCCAGGCCAGCATCAGTTTTCCCCGGGGGATAAAGGCGGCG 7800
Query 302 GGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACT 361
|||||||||| | |||||||| |||||||||||| ||| ||| | | | |||||
Sbjct 7799 GGAATGTGGCTCTCTTCGGGGAGTGTTATAGCCCACCGTGTAATACC-CTGGGGGGGACT 7741
Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421
||||| ||||| | || ||||||||||||||||||| | | || ||||||||| ||||
Sbjct 7740 GAGGTTCGCGCATCTGCAAGGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACA 7681
Query 422 CGGACCAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATG 480
|||||||||||||| | || |||||||||||| ||||||||||||| | |||||||||
Sbjct 7680 CGGACCAAGGAGTCGT-CTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATG 7622
Query 481 AAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGG 540
|||||||||| ||||| || | || ||| ||||||||||||||||||| ||||
Sbjct 7621 AAAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTCTCGG 7566
Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600
||||||||||||||||||||| | |||||||||||| ||||||||||||||| |||
Sbjct 7565 ATGGATTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATA 7506
Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 7505 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATC 7446
Query 661 GTCAAATTTGGGTATAGGGGCGA 683
||||||| |||| || |||||||
Sbjct 7445 GTCAAATATGGGCATGGGGGCGA 7423
Score = 280 bits (310), Expect = 6e-73
Identities = 178/193 (92%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| ||| |||||| ||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 202 TGTAAAGTTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 143
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 83
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 82 TGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTT 23
Query 203 GCAACCAGACTTG 215
||||||||||
Sbjct 22 ATGACCAGACTTG 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079972608350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |