Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233955.1_202017-07-27]
11,382 sequences; 59,420,771 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq154 279 8e-73
seq9 104 4e-20
>seq154
Length=7942
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 4201 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 4258
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 4259 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 4318
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 4319 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 4376
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4377 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4425
>seq9
Length=577821
Score = 104 bits (114), Expect = 4e-20
Identities = 117/152 (77%), Gaps = 5/152 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| || ||||| ||||| | |||| || |||| |||||||||||| ||| |
Sbjct 125032 GTACAAAGGGAAGCGACGTGATCAACACAAGCT-GACGACTTGCGCTTACTAGGGATT-C 124975
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| | ||| ||| ||||||| || ||||| | ||| | ||||||
Sbjct 124974 CTCGTTGAAGAGCAATAGTTGAAATACTCTATCCACAGCACGACAGAGTTTAACAAGATT 124915
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCG 151
||| ||||| || ||| ||| | |||||
Sbjct 124914 GCCCTGACCTCCTGGACAA--TGAAACACTCG 124885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751917082130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |