Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq666 365 4e-96 seq124 206 2e-48 >seq666 Length=1138835 Score = 365 bits (404), Expect = 4e-96 Identities = 1226/1880 (65%), Gaps = 50/1880 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || |||||||| || | | |||||| |||| || | ||| ||||||||||| || Sbjct 3037 ATCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGT 2978 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAA-TGCATCGATGATAATTTTGCATAAT-TCGGC 65194 |||||||||| ||| || | ||| ||||| || | || |||| | | || Sbjct 2977 CTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATAC-TGGTGATCTTGCCCATCGTGGGG 2920 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || |||| ||||| |||||| ||| | ||| ||||| |||||| Sbjct 2919 TCTTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCC 2860 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 || | || || | || || |||||||| |||||||| ||||| | | | || || Sbjct 2859 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGA-GCCTTGACATC 2801 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 || || | ||||| ||| | |||||| ||||| ||||| || ||| Sbjct 2800 GGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCAT 2741 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACT 65431 | || ||||||| ||||| |||| ||| | |||| | || | | |||| || Sbjct 2740 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC--AGCCAGGGGTTGACAACC 2683 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 |||||||| || | || ||||| || ||||||||||| ||| ||| || ||| | Sbjct 2682 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 2623 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 || ||||||| ||||| |||| ||| || || ||||| ||||| | | || | Sbjct 2622 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCCGTAGGCATAGGAGCAAGGAGCAGACTG 2563 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCGGTTT 65610 || || | |||| | | | | | || | | || ||||||| ||| | | | Sbjct 2562 TTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTC-TCCCAGTCCCAGA---GGTC 2507 Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670 | | | | | ||| |||||| || || ||| | || | ||| || ||||| Sbjct 2506 AGAG--GGCTTG-ACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACC 2450 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 ||| | ||| ||||||||||| || || || | || ||| || || Sbjct 2449 TTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGCAGTGAGGGCAGC 2390 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 |||||||||||||| || | || || ||||| ||||| |||| | || Sbjct 2389 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGG 2330 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||| | || | |||| ||||| || || ||||| |||| ||| ||||| || || Sbjct 2329 CATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 2270 Query 65851 ACGCAAATTGGAACGTCTCG--CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 |||| || | || || |||| | |||||||||| || | |||||| || Sbjct 2269 GCGCATGTT--ACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTG 2212 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968 |||| ||||| | || || || || |||| | | ||| || || Sbjct 2211 TTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCG-------TA 2159 Query 65969 GGACG----ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 | | | |||| || | | | | ||| || || ||||| || ||||| Sbjct 2158 GCAAGCCTCATCGTAGTTGATGAA------AGA---GGGCAGAGCCAGAGAGGCAAGGTT 2108 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||||||||| | ||||||||| || ||||| | |||||| |||||||| || || Sbjct 2107 GCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCT 2048 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 || ||||| || | |||| ||| || |||||||| ||||| ||||||||||| | ||| Sbjct 2047 TCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCAT 1988 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | | || | ||||||||| |||| ||||| ||||||| |||||| | ||||| Sbjct 1987 GAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTT 1928 Query 66205 CACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | || | | | |||| | | | | ||||| | |||||| || ||||| | Sbjct 1927 GATAGT-CTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 1869 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 | || | |||| || | || |||| || || |||||||||| ||| || || | Sbjct 1868 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 1809 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 || ||| ||||| ||| || |||||||| ||||| |||||| ||| || || || | Sbjct 1808 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 1749 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || |||||| | ||||| || || || | || |||||||| |||| || | | Sbjct 1748 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 1689 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || || ||||||||||| || | || || ||| |||||| |||||||| | Sbjct 1688 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 1629 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 ||||||| |||||||||||||| | ||| || || | ||||| ||| | || |||| Sbjct 1628 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 1569 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | ||| ||||| ||| || || || ||| ||| || ||||||||||||||||| | Sbjct 1568 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAG 1509 Query 66624 CCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 || |||| ||||| ||||| || | | | || | | || || ||||| ||| Sbjct 1508 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC--GTAGATTCCCTCAATACTGTC 1451 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 |||| || | | | |||| || | |||||| | || ||| |||| ||| Sbjct 1450 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 1391 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 ||| ||||| | || || || ||| | | || ||||| ||||| ||||| | ||| Sbjct 1390 GAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 1331 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCC 66860 || || | || || ||| || | | |||| ||||| | | || ||||| | Sbjct 1330 TCGCTCGATATCATCACCCCAAATACCAACAGACACA-CGCATGATCATGTGCTGAGGGC 1272 Query 66861 GTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920 | ||||| | | | | | || | | | ||| || || |||| ||||||| |||| Sbjct 1271 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 1212 Query 66921 AGTACGAGTAATTGAAATCG 66940 |||| ||| | ||||||| Sbjct 1211 AGTATTGGTATTGGAAATCG 1192 >seq124 Length=480479 Score = 206 bits (228), Expect = 2e-48 Identities = 565/856 (66%), Gaps = 22/856 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | |||||| | ||| | Sbjct 358540 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCTGAGGAGATTGATCTT 358481 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| || | |||||||| | || | | || ||| || ||| | Sbjct 358480 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 358421 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | | || ||||| || || || || ||||| ||||| ||||| | | || || Sbjct 358420 CACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGA 358361 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| ||||| || | | ||||| ||||| ||||||||||||||||| ||| Sbjct 358360 TTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 358301 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| || Sbjct 358300 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCT 358241 Query 61384 GAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG---- 61438 | || | | | | || || ||||| ||||| || || || | | ||||| Sbjct 358240 CAGCGA-ACCTACCTCTTTAACGCCATTGAGACCATCCCC----TGCATCCGAAAGAAGG 358186 Query 61439 CGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCT 61496 | || |||||| || |||||| ||| | || | || | |||| | || | | Sbjct 358185 CCGACTGGGCCATCCGATGGATC--CAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGT 358128 Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556 || || || | || |||||| | || |||||||| | || ||| | ||||| ||| | Sbjct 358127 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 358068 Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||||| ||||| || |||||||||||||||||| ||| ||| | || || || || || Sbjct 358067 CAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 358008 Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGT 61675 ||| | || ||| ||||| | || || || || | || | |||| | Sbjct 358007 GGGTCTTCACACTGACTTTGC---CTGCCTCCTC-CACTCTCACCTCAAGGGTCGTGCCA 357952 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 || || | || || || ||| || || || || || ||||| || || | Sbjct 357951 GCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCA 357892 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 |||| ||| | ||| | || |||||||||| | || || ||| |||||| |||| Sbjct 357891 CTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTG 357832 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | || || || || ||||| | |||| | || | || | | || || | | | Sbjct 357831 AGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCA 357772 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||| || || |||||||| | || || || | ||||||||| || || |||||||| | Sbjct 357771 ACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGC 357712 Query 61916 GTGTAGGCGACTATCA 61931 |||| | |||||| || Sbjct 357711 GTGTTGCCGACTACCA 357696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561822166000