Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq812 181 2e-43 seq813 114 2e-23 seq480 104 4e-20 >seq812 Length=708 Score = 181 bits (200), Expect = 2e-43 Identities = 185/237 (78%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 46 GTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105 ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 708 GTCCGACCGGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAG 649 Query 106 TCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAG 165 |||||||||||||||||||| |||||| | | || |||| | ||| ||| | |||||| Sbjct 648 TCAGAATCCATGCCAGAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAG 591 Query 166 GCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGC 221 |||||||| | |||||||||| | | |||| || |||||||| | Sbjct 590 GCTTCGGCTTAGCGTCTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGT 536 Query 222 GCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | | | | ||| |||| ||||||| || | || ||| |||||||||||||||||| Sbjct 535 GGT-ATTTCGCGTATTGTAATTTCAACACGAGCGGGGGCAAATCCTTTGCAGACGAC 480 >seq813 Length=486 Score = 114 bits (126), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 12/192 (6%) Strand=Plus/Plus Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTA 150 ||||||||||||||||||||||||||||||||||| |||||| | | || |||| | || Sbjct 1 CTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGCGGTGATAC-CACCCGCACGT-ATA 58 Query 151 GTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCC 206 | ||| | |||||||||||||| | |||||||||| | | |||| || Sbjct 59 GATGGACAAGAATAGGCTTCGGCTTAGCGTCTTAGCAGGCGATTCTTCCACGGCGCTC-- 116 Query 207 GCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCC 266 |||||||| | | || | ||| |||| ||||||| || | || ||| |||||| Sbjct 117 ---GAAGCGCGTCGTG-GCATTTCGCGTATTGTAATTTCAACACGAGCGGGGTCAAATCC 172 Query 267 TTTGCAGACGAC 278 |||||||||||| Sbjct 173 TTTGCAGACGAC 184 >seq480 Length=718 Score = 104 bits (114), Expect = 4e-20 Identities = 137/186 (74%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 97 GCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGA 156 ||||||||||||||||||||||||||||| |||||| | | || |||| | ||| ||| Sbjct 1 GCCTCTAAGTCAGAATCCATGCCAGAACGCGGTGATAC-CACCCGCACGT-ATAGATGGA 58 Query 157 TACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAA 212 | |||||||||||||| | |||||||||| | | |||| || ||| Sbjct 59 CAAGAATAGGCTTCGGCTTAGCGTCTTAGCAGGCGATTCTTCCACGGCGCTC-----GAA 113 Query 213 GCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCA 272 ||||| | | | | | ||| |||| ||||||| || | || ||| |||||||||||| Sbjct 114 GCGCGTCGTGGT-ATTTCGCGTATTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCA 172 Query 273 GACGAC 278 |||||| Sbjct 173 GACGAC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819189127680