Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq812 181 2e-43
seq813 114 2e-23
seq480 104 4e-20
>seq812
Length=708
Score = 181 bits (200), Expect = 2e-43
Identities = 185/237 (78%), Gaps = 12/237 (5%)
Strand=Plus/Minus
Query 46 GTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 708 GTCCGACCGGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAG 649
Query 106 TCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAG 165
|||||||||||||||||||| |||||| | | || |||| | ||| ||| | ||||||
Sbjct 648 TCAGAATCCATGCCAGAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAG 591
Query 166 GCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGC 221
|||||||| | |||||||||| | | |||| || |||||||| |
Sbjct 590 GCTTCGGCTTAGCGTCTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGT 536
Query 222 GCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
| | | | ||| |||| ||||||| || | || ||| ||||||||||||||||||
Sbjct 535 GGT-ATTTCGCGTATTGTAATTTCAACACGAGCGGGGGCAAATCCTTTGCAGACGAC 480
>seq813
Length=486
Score = 114 bits (126), Expect = 2e-23
Identities = 143/192 (74%), Gaps = 12/192 (6%)
Strand=Plus/Plus
Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTA 150
||||||||||||||||||||||||||||||||||| |||||| | | || |||| | ||
Sbjct 1 CTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGCGGTGATAC-CACCCGCACGT-ATA 58
Query 151 GTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCC 206
| ||| | |||||||||||||| | |||||||||| | | |||| ||
Sbjct 59 GATGGACAAGAATAGGCTTCGGCTTAGCGTCTTAGCAGGCGATTCTTCCACGGCGCTC-- 116
Query 207 GCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCC 266
|||||||| | | || | ||| |||| ||||||| || | || ||| ||||||
Sbjct 117 ---GAAGCGCGTCGTG-GCATTTCGCGTATTGTAATTTCAACACGAGCGGGGTCAAATCC 172
Query 267 TTTGCAGACGAC 278
||||||||||||
Sbjct 173 TTTGCAGACGAC 184
>seq480
Length=718
Score = 104 bits (114), Expect = 4e-20
Identities = 137/186 (74%), Gaps = 12/186 (6%)
Strand=Plus/Plus
Query 97 GCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGA 156
||||||||||||||||||||||||||||| |||||| | | || |||| | ||| |||
Sbjct 1 GCCTCTAAGTCAGAATCCATGCCAGAACGCGGTGATAC-CACCCGCACGT-ATAGATGGA 58
Query 157 TACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAA 212
| |||||||||||||| | |||||||||| | | |||| || |||
Sbjct 59 CAAGAATAGGCTTCGGCTTAGCGTCTTAGCAGGCGATTCTTCCACGGCGCTC-----GAA 113
Query 213 GCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCA 272
||||| | | | | | ||| |||| ||||||| || | || ||| ||||||||||||
Sbjct 114 GCGCGTCGTGGT-ATTTCGCGTATTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCA 172
Query 273 GACGAC 278
||||||
Sbjct 173 GACGAC 178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819189127680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |