Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1077 113 2e-19 >seq1077 Length=93391 Score = 113 bits (124), Expect = 2e-19 Identities = 215/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 12733 AACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACC 12792 ||||||||| ||| || ||||| || | | ||| || ||||| || | ||||||||| Sbjct 49038 AACATCGTAGTAGATGACGTTCATACCCATAGCCTCAGCGAGGACGGACAGCTGAGAACC 49097 Query 12793 AATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGA 12852 ||||| || || || || ||||| || ||||| |||| || || | || || | ||| Sbjct 49098 AATGTGGCCGTAGCCAACGATACCCAGAGTCTTGCCTCGAATCTCCCAGC-ACTTGGAGC 49156 Query 12853 AG-TCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911 | ||||||||| ||||| |||| | || ||| || ||| |||| |||||| | || Sbjct 49157 TGACCTTGTTCCAGGTGCCTCGGTGCATCTCGTTGGATCGATCGCCAAGCTGACGGGCAA 49216 Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971 || || | | | |||| ||||| || || || | | ||| ||||| || | Sbjct 49217 GAACGATGATCTCGGCGATGACCAGCTCAGCGACACTGCGCGAGTTAGCGAAGGGGGAGT 49276 Query 12972 TAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGC 13031 | ||||| ||||| || |||| || | || || | ||||| | | ||| || | Sbjct 49277 TGAAGACGGCAATACCATTCTTGGCGGCGAACTCAAGGTCGACCTGGTTGGTACCGATAC 49336 Query 13032 AGAAGCATCCTATG 13045 ||||||| || ||| Sbjct 49337 AGAAGCAGCCGATG 49350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884853314353410