Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495 .1_202016-08-10] 1,129 sequences; 48,892,912 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq909 279 8e-73 seq942 113 7e-23 seq373 73.4 6e-11 >seq909 Length=7872 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 4894 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 4951 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 4952 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5011 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 5012 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5069 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5070 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5118 >seq942 Length=1175861 Score = 113 bits (124), Expect = 7e-23 Identities = 119/152 (78%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||| | ||| | |||| || |||| |||||||||||| ||| | Sbjct 633719 GTACAAAGGGAAGGGACGTGATTAACACAAGCT-GACGACTTGCGCTTACTAGGGATTGC 633777 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||| ||| | ||| ||| ||||||| || ||||| | ||| | |||||| Sbjct 633778 -TCGTTGAAGAGCAATAGTTGAAATACTCTATCCACAGCACGACCGAGTTTAACAAGATT 633836 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCG 151 || ||||||| |||| ||| ||| | ||||| Sbjct 633837 ACTCGGACCTCTCGGACAA--TGAAACACTCG 633866 >seq373 Length=145743 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||| || ||| || | | ||||||| | |||||||||||||| ||||||||| ||||| Sbjct 96738 CATCCGTTTAGTGCACATACGGCCCACAGCATCTAAGGGCATCGCAGACCTGTCCTTGCC 96679 Query 219 TCAAACTTCC 228 || ||||||| Sbjct 96678 TCCAACTTCC 96669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751991775235