Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702495
.1_202016-08-10] 1,129 sequences; 48,892,912 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq192 381 5e-101
seq1097 203 3e-47
>seq192
Length=101724
Score = 381 bits (422), Expect = 5e-101
Identities = 1232/1882 (65%), Gaps = 54/1882 (3%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || |||||||| || | | |||||| |||| || | ||| ||||||||||| ||
Sbjct 52723 ATCAACGGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGT 52664
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAA-TGCATCGATGATAATTTTGCATAAT-TCGGC 65194
|||||||||| ||| || | ||| ||||| || | || |||| | | ||
Sbjct 52663 CTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATAC-TGGTGATCTTGCCCATCGTGGGG 52606
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || || || |||| ||||| |||||| ||| | ||| ||||| ||||||
Sbjct 52605 TCCTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCC 52546
Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313
|| | || || | || || |||||||| |||||||| ||||| | | | || ||
Sbjct 52545 ATCTGAACGACCTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGA-GCCTTGACATC 52487
Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373
|| || | ||||| ||| | |||||| ||||| ||||| || |||
Sbjct 52486 GGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCAT 52427
Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACT 65431
| || ||||||| ||||| |||| ||| | |||| | || | | |||| ||
Sbjct 52426 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC--AGCCAGGGGTTGACAACC 52369
Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491
|||||||| || | || ||||| || ||||||||||| ||| ||| || ||| |
Sbjct 52368 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 52309
Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551
|| ||||||| ||||| |||| ||| ||||| ||||| ||||| | | || |
Sbjct 52308 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 52249
Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCGGTTT 65610
|| || | |||| | | | | | || | | || ||||||| ||| | | |
Sbjct 52248 TTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTC-TCCCAGTCCCAGA---GGTC 52193
Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670
| | | | | ||| |||||| || || ||| | || | ||| || |||||
Sbjct 52192 AGAG--GGCTTG-ACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACC 52136
Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730
||| || ||| ||||||||||| || || || | || ||| || ||
Sbjct 52135 TTTGAAGGTAGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGCAGTGAGGGCAGC 52076
Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCT--CTCGTAC 65788
|||||||||||||| || | || || ||||| ||||| || | |||| |
Sbjct 52075 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTC--CGGTGACTCGAAG 52018
Query 65789 GGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848
||||| | || | |||| ||||| || || ||||| |||| ||| ||||| ||
Sbjct 52017 GGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGG 51958
Query 65849 TGACGCAAATTGGAACGTCTCG--CCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906
|| |||| || | || || |||| | |||||||||| || | |||||| ||
Sbjct 51957 TGGCGCATGTT--ACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCT 51900
Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTT 65966
|||| ||||| || || || || |||| | | ||| ||
Sbjct 51899 TGTTCAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCG------- 51847
Query 65967 TAGGACG----ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022
||| | | |||| || | | | | ||| || || ||||| || |||
Sbjct 51846 TAGCAAGCCTCATCGTAGTTGATGAA------AGA---GGGCAGAGCCAGAGAGGCAAGG 51796
Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082
||||||||||| | ||||||||| || ||||| | |||||| |||||||| || |
Sbjct 51795 TTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAG 51736
Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142
| || ||||| || | |||| ||| || |||||||| ||||| ||||||||||| | |
Sbjct 51735 CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGC 51676
Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202
||| | || | ||||||||| |||| ||||| ||||||| |||||| | |||
Sbjct 51675 ATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCC 51616
Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261
|| | || | | | |||| | | | | ||||| | |||||| || |||||
Sbjct 51615 TTGATAGT-CTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTC 51557
Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321
|| || | |||| || | || |||| || || |||||||||| ||| |||||
Sbjct 51556 CTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACC 51497
Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381
| || ||| ||||| ||| || |||||||| ||||| |||||| ||| || || ||
Sbjct 51496 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACG 51437
Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441
|| || |||||| | ||||| || || || | || |||||||| |||| || |
Sbjct 51436 GGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGA 51377
Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501
||||| || || ||||||||||| || | || || ||| |||||| ||||||||
Sbjct 51376 GTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGAC 51317
Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561
|||||||| |||||||||||||| | ||| || || | ||||| ||| | || ||
Sbjct 51316 ATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTT 51257
Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621
||| ||| ||||| ||| || || || ||| ||| || |||||||||||||||||
Sbjct 51256 GGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACC 51197
Query 66622 GGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAG 66679
||| |||| ||||| ||||| || | | | || | | || || ||||| |
Sbjct 51196 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC--GTAGATTCCCTCAATACTG 51139
Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739
|| |||| || | | | |||| || | |||||| | || ||| |||| |
Sbjct 51138 TCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTG 51079
Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799
||||| ||||| | ||| || || ||| | | || ||||| ||||| ||||| | |
Sbjct 51078 AAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAG 51019
Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGG 66858
|| || || | || || ||| || | | |||| ||||| | | || |||||
Sbjct 51018 ACTCGCTCGATATCATCACCCCAAATACCAACAGACACA-CGCATGATCATGTGCTGAGG 50960
Query 66859 CCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACC 66918
|| ||||| | | | | | || | | | ||| || || |||| ||||||| ||
Sbjct 50959 GCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCC 50900
Query 66919 AAAGTACGAGTAATTGAAATCG 66940
|||||| ||| | |||||||
Sbjct 50899 AAAGTATTGGTATTGGAAATCG 50878
>seq1097
Length=481400
Score = 203 bits (224), Expect = 3e-47
Identities = 562/855 (66%), Gaps = 20/855 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| || |||||||||||||| | |||||| | ||| |
Sbjct 425427 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 425368
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
||||| || | | |||||| | || | | || ||| || ||| |
Sbjct 425367 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 425308
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| | | || ||||| || || || || ||||| ||||| ||||| | | || ||
Sbjct 425307 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGA 425248
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| ||||| || | | ||||| ||||| ||||||||||||||||| |||
Sbjct 425247 TTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 425188
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| ||
Sbjct 425187 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCC 425128
Query 61384 GAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG---- 61438
| || | | | | || || ||||| ||||| || || || | | |||||
Sbjct 425127 CAGCGA-ACCTACCTCTTTAACGCCATTGAGACCATTCCC----TGCATCCGAAAGAAGG 425073
Query 61439 CGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCT 61496
| || |||||| || |||||| ||| | || | || | |||| | || | |
Sbjct 425072 CCGACTGGGCCATCCGATGGATC--CAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGT 425015
Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556
|| || || | || |||||| | || |||||||| | || ||| | ||||| ||| |
Sbjct 425014 TGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 424955
Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616
||||| ||||| || |||||||||||||||||| ||| ||| | || || || || ||
Sbjct 424954 CAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 424895
Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676
||| | || ||| ||||| | || || | | | || | |||| |
Sbjct 424894 GGGTCTTCACACTGACTTTGC---CTGCCTCCTCCACTCCCACCTCAAGGGTCGTGCCAG 424838
Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736
|| || | || || || ||| || || || || || ||||| || || ||
Sbjct 424837 CAAGCAGATGATCCAGGATATCATTACTGACGCCGTCACCATTGAGCAGGAGTTCCTCAC 424778
Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796
||| ||| | ||| | || |||||||||| | || || ||| |||||| |||||
Sbjct 424777 TGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGA 424718
Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856
|| || || || ||||| | |||| | || | || | | || || | | ||
Sbjct 424717 GTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAA 424658
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
||| || || |||||||| | || || || | ||||||||| || || |||||||| ||
Sbjct 424657 CCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCG 424598
Query 61917 TGTAGGCGACTATCA 61931
||| | |||||| ||
Sbjct 424597 TGTTGCCGACTACCA 424583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562529588560
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