Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2945 279 8e-73 seq2756 107 3e-21 >seq2945 Length=7868 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 2248 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 2191 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 2190 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 2131 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 2130 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 2073 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2072 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 2024 >seq2756 Length=1201414 Score = 107 bits (118), Expect = 3e-21 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||| ||||| | |||| || ||| |||||||||||| ||| | Sbjct 871909 GTACAAAGGGAAGGGACGTAATCAACACAAGCT-GACAACTTGCGCTTACTAGGGATTGC 871967 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||| ||| | ||| ||| ||||||| || |||| | | || | |||||| Sbjct 871968 -TCGTTGAAGAGCAATAGTTGAAATACTCTATCCACAGCACGGCGGAGGTTAACAAGATT 872026 Query 120 ACCCGGACCT 129 |||||||||| Sbjct 872027 ACCCGGACCT 872036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751971836190