Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2945 443 4e-122 seq2756 149 1e-33 >seq2945 Length=7868 Score = 443 bits (490), Expect = 4e-122 Identities = 284/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 1941 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 2000 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2001 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 2060 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| ||| Sbjct 2061 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 2118 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2119 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 2178 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 2179 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 2238 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 2239 CCCTTTGTA 2247 >seq2756 Length=1201414 Score = 149 bits (164), Expect = 1e-33 Identities = 109/127 (86%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||||| ||||||||||||||| ||| | ||||||| |||||||| ||| ||| ||||||| Sbjct 872036 AGGTCCGGGTAATCTTGTTAACCTCCGCCGTGCTGTGGATAGAGTATTTCAACTATTGCT 871977 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 |||||||||| ||| |||||||||||| || ||||| | ||||||||||||||| || Sbjct 871976 CTTCAACGAGCAATCCCTAGTAAGCGCAAGTTGTCAGCTTGTGTTGATTACGTCCCTTCC 871917 Query 322 CTTTGTA 328 ||||||| Sbjct 871916 CTTTGTA 871910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947163381248