Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545
.1_202016-08-10] 3,866 sequences; 57,435,926 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq380 365 4e-96
seq3504 203 3e-47
>seq380
Length=2124523
Score = 365 bits (404), Expect = 4e-96
Identities = 1226/1880 (65%), Gaps = 50/1880 (3%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || |||||||| || | | |||||| |||| || | ||| ||||||||||| ||
Sbjct 1304533 ATCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGT 1304592
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAA-TGCATCGATGATAATTTTGCATAAT-TCGGC 65194
|||||||||| ||| || | ||| ||||| || | || |||| | | ||
Sbjct 1304593 CTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATAC-TGGTGATCTTGCCCATCGTGGGG 1304650
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || || || |||| ||||| |||||| ||| | ||| ||||| ||||||
Sbjct 1304651 TCTTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCC 1304710
Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313
|| | || || | || || |||||||| |||||||| ||||| | | | || ||
Sbjct 1304711 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGA-GCCTTGACATC 1304769
Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373
|| || | ||||| ||| | |||||| ||||| ||||| || |||
Sbjct 1304770 GGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCAT 1304829
Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACT 65431
| || ||||||| ||||| |||| ||| | |||| | || | | |||| ||
Sbjct 1304830 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC--AGCCAGGGGTTGACAACC 1304887
Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491
|||||||| || | || ||||| || ||||||||||| ||| ||| || ||| |
Sbjct 1304888 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 1304947
Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551
|| ||||||| ||||| |||| ||| ||||| ||||| ||||| | | || |
Sbjct 1304948 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1305007
Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCGGTTT 65610
|| || | |||| | | | | | || | | || ||||||| ||| | | |
Sbjct 1305008 TTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTC-TCCCAGTCCCAGA---GGTC 1305063
Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670
| | | | | ||| |||||| || || ||| | || | ||| || |||||
Sbjct 1305064 AGAG--GGCTTG-ACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACC 1305120
Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730
||| | ||| ||||||||||| || || || | || ||| || ||
Sbjct 1305121 TTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGCAGTGAGGGCAGC 1305180
Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790
|||||||||||||| || | || || ||||| ||||| |||| | ||
Sbjct 1305181 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGG 1305240
Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850
||| | || | |||| ||||| || || ||||| |||| ||| ||||| || ||
Sbjct 1305241 CATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 1305300
Query 65851 ACGCAAATTGGAACGTCTCG--CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908
|||| || | || || |||| | |||||||||| || | |||||| ||
Sbjct 1305301 GCGCATGTT--ACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTG 1305358
Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968
|||| ||||| | || || || || |||| | | ||| || ||
Sbjct 1305359 TTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCG-------TA 1305411
Query 65969 GGACG----ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024
| | | |||| || | | | | ||| || || ||||| || |||||
Sbjct 1305412 GCAAGCCTCATCGTAGTTGATGAA------AGA---GGGCAGAGCCAGAGAGGCAAGGTT 1305462
Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084
||||||||| | ||||||||| || ||||| | |||||| |||||||| || ||
Sbjct 1305463 GCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCT 1305522
Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144
|| ||||| || | |||| ||| || |||||||| ||||| ||||||||||| | |||
Sbjct 1305523 TCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCAT 1305582
Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204
| | || | ||||||||| |||| ||||| ||||||| |||||| | |||||
Sbjct 1305583 GAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTT 1305642
Query 66205 CACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263
| || | | | |||| | | | | ||||| | |||||| || ||||| |
Sbjct 1305643 GATAGT-CTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 1305701
Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323
| || | |||| || | || |||| || || |||||||||| ||| || || |
Sbjct 1305702 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 1305761
Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383
|| ||| ||||| ||| || |||||||| ||||| |||||| ||| || || || |
Sbjct 1305762 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 1305821
Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443
| || |||||| | ||||| || || || | || |||||||| |||| || | |
Sbjct 1305822 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 1305881
Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503
|||| || || ||||||||||| || | || || ||| |||||| |||||||| |
Sbjct 1305882 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 1305941
Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563
||||||| |||||||||||||| | ||| || || | ||||| ||| | || ||||
Sbjct 1305942 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 1306001
Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623
| ||| |||| ||| || || || ||| ||| || ||||||||||||||||| |
Sbjct 1306002 TACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAG 1306061
Query 66624 CCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681
|| |||| ||||| ||||| || | | | || | | || || ||||| |||
Sbjct 1306062 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC--GTAGATTCCCTCAATACTGTC 1306119
Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741
|||| || | | | |||| || | |||||| | || ||| |||| |||
Sbjct 1306120 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 1306179
Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801
||| ||||| | || || || ||| | | || ||||| ||||| ||||| | |||
Sbjct 1306180 GAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 1306239
Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCC 66860
|| || | || || ||| || | | |||| ||||| | | || ||||| |
Sbjct 1306240 TCGCTCGATATCATCACCCCAAATACCAACAGACACA-CGCATGATCATGTGCTGAGGGC 1306298
Query 66861 GTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920
| ||||| | | | | | || | | | ||| || || |||| ||||||| ||||
Sbjct 1306299 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 1306358
Query 66921 AGTACGAGTAATTGAAATCG 66940
|||| ||| | |||||||
Sbjct 1306359 AGTATTGGTATTGGAAATCG 1306378
>seq3504
Length=162315
Score = 203 bits (224), Expect = 3e-47
Identities = 564/856 (66%), Gaps = 22/856 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| || |||||||||||||| | |||||| | ||| |
Sbjct 155466 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 155407
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
||||| || | |||||||| | || | | || ||| || ||| |
Sbjct 155406 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 155347
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| | | || || || || || || || ||||| ||||| ||||| | | || ||
Sbjct 155346 CACATCCTTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGA 155287
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| ||||| || | | ||||| ||||| ||||||||||||||||| |||
Sbjct 155286 TTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 155227
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| ||
Sbjct 155226 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCC 155167
Query 61384 GAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG---- 61438
| || | | | | || || ||||| ||||| || || || | | |||||
Sbjct 155166 CAGCGA-ACCTACCTCTTTAACGCCATTGAGACCATCCCC----TGCATCCGAAAGAAGG 155112
Query 61439 CGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCT 61496
| || |||||| || |||||| ||| | || | || | |||| | || | |
Sbjct 155111 CCGACTGGGCCATCCGATGGATC--CAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGT 155054
Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556
|| || || | || |||||| | || |||||||| | || ||| | ||||| ||| |
Sbjct 155053 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 154994
Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616
||||| ||||| || |||||||||||||||||| ||| ||| | || || || || ||
Sbjct 154993 CAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 154934
Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGT 61675
||| | || ||| ||||| | || || || || | || | |||| |
Sbjct 154933 GGGTCTTCACACTGACTTTGC---CTGCCTCCTC-CACTCTCACCTCAAGGGTCGTGCCA 154878
Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735
|| || | || || || ||| || || || || || ||||| || || |
Sbjct 154877 GCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCA 154818
Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795
|||| ||| | ||| | || |||||||||| | || || ||| |||||| ||||
Sbjct 154817 CTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTG 154758
Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855
| || || || || ||||| | |||| | || | || | | || || | | |
Sbjct 154757 AGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCA 154698
Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915
|||| || || |||||||| | || || || | ||||||||| || || |||||||| |
Sbjct 154697 ACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGC 154638
Query 61916 GTGTAGGCGACTATCA 61931
|||| | |||||| ||
Sbjct 154637 GTGTTGCCGACTACCA 154622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397549267838240
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