Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq418 279 8e-73 seq595 125 1e-26 seq903 77.0 5e-12 >seq418 Length=7870 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 5591 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5648 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 5649 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5708 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 5709 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5766 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5767 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5815 >seq595 Length=961575 Score = 125 bits (138), Expect = 1e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||| ||||| | |||| ||||||| |||||||||||| ||| | Sbjct 662807 GTACAAAGGGAAGGGACGTGATCAACACAAGCT-GATGACTTGCGCTTACTAGGGATTGC 662865 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||| ||| | ||| ||| ||||||| || ||||| | | ||| | |||||| Sbjct 662866 -TCGTTGAAGAGCAATAGTTGAAATACTCTATCCACAGCACGACGGAGTTTAACAAGATT 662924 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCG 151 || ||||||| |||| ||| ||| | ||||| Sbjct 662925 ACTCGGACCTCTCGGACAA--TGAAACACTCG 662954 >seq903 Length=22495 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||| || |||||| | | ||||||| | |||||||||||||| ||||||||| ||||| Sbjct 16735 CATCCGTTTAGCGCACATACGGCCCACAGCATCTAAGGGCATCGCAGACCTGTCCTTGCC 16676 Query 219 TCAAACTTCC 228 || ||||||| Sbjct 16675 TCCAACTTCC 16666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751990427510