Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq454 374 7e-99
seq526 206 2e-48
>seq454
Length=245286
Score = 374 bits (414), Expect = 7e-99
Identities = 1228/1880 (65%), Gaps = 50/1880 (3%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || |||||||| || | | |||||| |||| || | ||| ||||||||||| ||
Sbjct 12249 ATCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGT 12190
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAA-TGCATCGATGATAATTTTGCATAAT-TCGGC 65194
|||||||||| ||| || | ||| ||||| || | || |||| | | ||
Sbjct 12189 CTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATAC-TGGTGATCTTGCCCATCGTGGGG 12132
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || || || |||| ||||| |||||| ||| | ||| ||||| ||||||
Sbjct 12131 TCTTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCC 12072
Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313
|| | || || | || || |||||||| |||||||| ||||| | | | || ||
Sbjct 12071 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGA-GCCTTGACATC 12013
Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373
|| || | ||||| ||| | |||||| ||||| ||||| || |||
Sbjct 12012 GGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCAT 11953
Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACT 65431
| || ||||||| ||||| |||| ||| | |||| | || | | |||| ||
Sbjct 11952 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC--AGCCAGGGGTTGACAACC 11895
Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491
|||||||| || | || ||||| || ||||||||||| ||| ||| || ||| |
Sbjct 11894 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 11835
Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551
|| ||||||| ||||| |||| ||| ||||| ||||| ||||| | | || |
Sbjct 11834 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 11775
Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCGGTTT 65610
|| || | |||| | | | | | || | | || ||||||| ||| | | |
Sbjct 11774 TTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTC-TCCCAGTCCCAGA---GGTC 11719
Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670
| | | | | ||| |||||| || || ||| | || | ||| || |||||
Sbjct 11718 AGAG--GGCTTG-ACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACC 11662
Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730
||| | ||| ||||||||||| || || || | || ||| || ||
Sbjct 11661 TTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGCAGTGAGGGCAGC 11602
Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790
|||||||||||||| || | || || ||||| ||||| |||| | ||
Sbjct 11601 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGG 11542
Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850
||| | || | |||| ||||| || || ||||| |||| ||| ||||| || ||
Sbjct 11541 CATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 11482
Query 65851 ACGCAAATTGGAACGTCTCG--CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908
|||| || | || || |||| | |||||||||| || | |||||| ||
Sbjct 11481 GCGCATGTT--ACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTG 11424
Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968
|||| ||||| | || || || || |||| | | ||| || ||
Sbjct 11423 TTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCG-------TA 11371
Query 65969 GGACG----ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024
| | | |||| || | | | | ||| || || ||||| || |||||
Sbjct 11370 GCAAGCCTCATCGTAGTTGATGAA------AGA---GGGCAGAGCCAGAGAGGCAAGGTT 11320
Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084
||||||||| | ||||||||| || ||||| | |||||| |||||||| || ||
Sbjct 11319 GCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCT 11260
Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144
|| ||||| || | |||| ||| || |||||||| ||||| ||||||||||| | |||
Sbjct 11259 TCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCAT 11200
Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204
| | || | ||||||||| |||| ||||| ||||||| |||||| | |||||
Sbjct 11199 GAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTT 11140
Query 66205 CACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263
| || | | | |||| | | | | ||||| | |||||| || ||||| |
Sbjct 11139 GATAGT-CTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 11081
Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323
| || | |||| || | || |||| || || |||||||||| ||| || || |
Sbjct 11080 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 11021
Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383
|| ||| ||||| ||| || |||||||| ||||| |||||| ||| || || || |
Sbjct 11020 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 10961
Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443
| || |||||| | ||||| || || || | || |||||||| |||| || | |
Sbjct 10960 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 10901
Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503
|||| || || ||||||||||| || | || || ||| |||||| |||||||| |
Sbjct 10900 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 10841
Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563
||||||| |||||||||||||| | ||| || || | ||||| ||| | || ||||
Sbjct 10840 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 10781
Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623
| ||| ||||| ||| || || || ||| ||| || ||||||||||||||||| |
Sbjct 10780 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAG 10721
Query 66624 CCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681
|| |||| ||||| ||||| || | | | || | | || || ||||| |||
Sbjct 10720 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC--GTAGATTCCCTCAATACTGTC 10663
Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741
|||| || | | | |||| || | |||||| | || ||| |||| |||
Sbjct 10662 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 10603
Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801
||| ||||| | ||| || || ||| | | || ||||| ||||| ||||| | |||
Sbjct 10602 GAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 10543
Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCC 66860
|| || | || || ||| || | | |||| ||||| | | || ||||| |
Sbjct 10542 TCGCTCGATATCATCACCCCAAATACCAACAGACACA-CGCATGATCATGTGCTGAGGGC 10484
Query 66861 GTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920
| ||||| | | | | | || | | | ||| || || |||| ||||||| ||||
Sbjct 10483 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 10424
Query 66921 AGTACGAGTAATTGAAATCG 66940
|||| ||| | |||||||
Sbjct 10423 AGTATTGGTATTGGAAATCG 10404
>seq526
Length=378168
Score = 206 bits (228), Expect = 2e-48
Identities = 565/856 (66%), Gaps = 22/856 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| || |||||||||||||| | |||||| | ||| |
Sbjct 285503 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 285444
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
||||| || | |||||||| | || | | || ||| || ||| |
Sbjct 285443 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 285384
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| | | || || || || || || || ||||| ||||| ||||| | | || ||
Sbjct 285383 CACATCCTTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGA 285324
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| ||||| || | | ||||| ||||| ||||||||||||||||| |||
Sbjct 285323 TTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 285264
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| ||
Sbjct 285263 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCC 285204
Query 61384 GAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG---- 61438
| || | | | | || || ||||| ||||| || || || | | |||||
Sbjct 285203 CAGCGA-ACCTACCTCTTTAACGCCATTGAGACCATCCCC----TGCATCCGAAAGAAGG 285149
Query 61439 CGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC--ATTTGGTGAACGATTGCT 61496
| || |||||| || |||||| ||| | || | || | ||||| | || | |
Sbjct 285148 CCGACTGGGCCATCCGATGGATC--CAGGATAAGGACTCCTCATTTGCCCAGCGTCTCGT 285091
Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556
|| || || | || |||||| | || |||||||| | || ||| | ||||| ||| |
Sbjct 285090 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 285031
Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616
||||| ||||| || |||||||||||||||||| ||| ||| | || || || || ||
Sbjct 285030 CAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 284971
Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGT 61675
||| | || ||| ||||| | || || || || | || | |||| |
Sbjct 284970 GGGTCTTCACACTGACTTTGC---CTGCCTCCTC-CACTCTCACCTCAAGGGTCGTGCCA 284915
Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735
|| || | || || || ||| || || || || || ||||| || || |
Sbjct 284914 GCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCA 284855
Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795
|||| ||| | ||| | || |||||||||| | || || ||| |||||| ||||
Sbjct 284854 CTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTG 284795
Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855
| || || || || ||||| | |||| | || | || | | || || | | |
Sbjct 284794 AGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCA 284735
Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915
|||| || || |||||||| | || || || | ||||||||| || || |||||||| |
Sbjct 284734 ACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGC 284675
Query 61916 GTGTAGGCGACTATCA 61931
|||| | |||||| ||
Sbjct 284674 GTGTTGCCGACTACCA 284659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397561633196960
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