Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1336 389 2e-105 seq1092 87.8 7e-15 >seq1336 Length=7872 Score = 389 bits (430), Expect = 2e-105 Identities = 309/367 (84%), Gaps = 7/367 (2%) Strand=Plus/Minus Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377 ||||| |||||||||||| ||| ||| | | | |||||||||| ||||| | | Sbjct 7872 CGGGGAGTGTTATAGCCCACCGTGTAATACC-CTGGGGGGGACTGAGGTTCGCGCATCTG 7814 Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437 | ||||||||||||||||||| | | || ||||||||| |||||||||||||||||| Sbjct 7813 CAAGGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTCGT 7754 Query 438 ACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496 | || |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| Sbjct 7753 -CTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTG 7695 Query 497 GGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGA 556 || | || ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 7694 AGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGA 7639 Query 557 GCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 616 ||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 7638 GCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGA 7579 Query 617 AACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || Sbjct 7578 AACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATG 7519 Query 677 GGGGCGA 683 ||||||| Sbjct 7518 GGGGCGA 7512 Score = 306 bits (338), Expect = 2e-80 Identities = 249/297 (84%), Gaps = 5/297 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| |||||| ||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 294 TGTAAAGTTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 235 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 234 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 175 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct 174 TGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTT 115 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAAC-CGGCCCCTCGGCCGGTGCACTCTTCTGCGG 261 |||||||||| | ||| ||| | || ||| || ||||||| ||| | | Sbjct 114 ATGACCAGACTTGGGCTTGGTTAATCATCTGGGGTTCTC-CCCAGTGCACTTTTC--CAG 58 Query 262 T-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 | |||||||||||||| | | | |||||||||| |||||||||||| | ||| Sbjct 57 TCCAGGCCAGCATCAGTTTTCCCCGGGGGATAAAGGCGGCGGGAATGTGGCTCTCTT 1 >seq1092 Length=659678 Score = 87.8 bits (96), Expect = 7e-15 Identities = 112/151 (74%), Gaps = 10/151 (7%) Strand=Plus/Minus Query 474 CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATG 533 |||||||||| ||||| |||||||| | | || ||| |||||| || ||||| | Sbjct 339110 CGTAATGAAATCGAACGCAGGTGGGAGCTTG----GGCGCATCATCGATCGGTCCTGGTA 339055 Query 534 TCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA--- 590 | |||||||||| ||||||| |||||| | || |||||||||| ||| ||||| Sbjct 339054 TTCTCGGATGGATCTGAGTAAAAGCATATGGGCCGG-ACCCGAAAGAAGGTAAACTACCT 338996 Query 591 TGC--CTGAATAGGGTGAAGCCAGAGGAAAC 619 | | ||| ||| ||||| |||| |||||| Sbjct 338995 TACTTCTGTATAAAGTGAATCCAGGGGAAAC 338965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079967803550