Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq960 145 2e-32 >seq960 Length=45728 Score = 145 bits (160), Expect = 2e-32 Identities = 203/279 (73%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||||| | |||||||| Sbjct 36950 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 37009 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 37010 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 37069 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC---TTCGCGT-TAGC 182 || | | |||| ||||||| || ||||||| ||| || | | | | || || Sbjct 37070 CCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCTACATCAAATATTAGTATATT 37128 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTT 241 ||| ||| |||||| |||||||||||||| | |||||| |||||| | | ||| Sbjct 37129 TAATTATATCTGTTAACCAGCCGGCACCGGGCAGACATCACACTCTATACTTAGATTTTT 37188 Query 242 CGTGTTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | ||| ||| ||||||||||||| | |||||||||| Sbjct 37189 AATCTTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 37227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260781075392