Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1336 443 4e-122 seq126 73.4 7e-11 >seq1336 Length=7872 Score = 443 bits (490), Expect = 4e-122 Identities = 284/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 1468 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 1409 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1408 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1349 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| ||| Sbjct 1348 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 1291 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1290 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1231 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 1230 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 1171 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1170 CCCTTTGTA 1162 >seq126 Length=17713 Score = 73.4 bits (80), Expect = 7e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||| ||||||| ||||||||| |||||||||||||| | ||||||| | | |||| Sbjct 1866 GGAAGTTGGAGGCAAGGACAGGTCTGCGATGCCCTTAGATGCTGTGGGCCGTATGTGCGC 1807 Query 163 TACACTGA 170 || || || Sbjct 1806 TAAACGGA 1799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947185782528