Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq3136 279 8e-73
seq380 122 1e-25
seq80 73.4 6e-11
>seq3136
Length=7877
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 7136 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 7079
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 7078 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 7019
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 7018 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 6961
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6960 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 6912
>seq380
Length=1607400
Score = 122 bits (134), Expect = 1e-25
Identities = 121/152 (80%), Gaps = 5/152 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| |||||||| ||||| | |||| || |||| |||||||||||| ||| |
Sbjct 1057387 GTACAAAGGGAAGGGACGTGATCAACACAAGCT-GACGACTTGCGCTTACTAGGGATTGC 1057445
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||||||| ||| | ||| ||| ||||||| || ||||| | | ||| | ||||||
Sbjct 1057446 -TCGTTGAAGAGCAATAGTTGAAATACTCTATCCACAGCACGACGGAGTTTAACAAGATT 1057504
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCG 151
|| ||||||| |||| ||| ||| | |||||
Sbjct 1057505 ACTCGGACCTCTCGGACAA--TGAAACACTCG 1057534
>seq80
Length=69143
Score = 73.4 bits (80), Expect = 6e-11
Identities = 58/70 (83%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218
|||| || |||||| | | ||||||| | |||||||||||||| ||||| ||| |||||
Sbjct 34641 CATCCGTCTAGCGCACATACGGCCCACAGCATCTAAGGGCATCGCAGACATGTCCTTGCC 34582
Query 219 TCAAACTTCC 228
|| |||||||
Sbjct 34581 TCCAACTTCC 34572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751977081390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |