Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq822 336 2e-87 seq1030 221 1e-52 >seq822 Length=1165972 Score = 336 bits (372), Expect = 2e-87 Identities = 1220/1878 (65%), Gaps = 46/1878 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || |||||||| || | | |||||| |||| || | ||| |||||||||||||| Sbjct 798286 ATCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGT 798227 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAA-TGCATCGATGATAATTTTGCATAAT-TCGGC 65194 |||||| ||| ||| || | ||| ||||| || | || |||| | | || Sbjct 798226 CTTGAGACCAAGTTTCCA-GCCTGCAAAGTGCATAC-TGGTGATCTTGCCCATCGTAGGG 798169 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || |||| ||||| ||| || ||| | ||| || || || ||| Sbjct 798168 TCCTTCATGTGGATGTTCAGTGACTGGGACTGGTCAATGAAGGCACCTCGGTCAGCGGCC 798109 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 || | || || | || || |||||||| || ||||| ||||| | | | || || Sbjct 798108 ATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGA-GCCTTGACATC 798050 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | || || | ||||| ||| | |||||| ||||| ||||| || ||| Sbjct 798049 AGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCAT 797990 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA---ACCAAGTGACGATTGATGA 65429 | || ||||||| ||||| |||| ||| | |||| |||| | | |||| | Sbjct 797989 AGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCAGGGG----TTGACAA 797934 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | |||||||| || | || ||||| || ||||||||||| ||| ||| || ||| Sbjct 797933 CCTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGC 797874 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549 | || ||||||| ||||| || | ||| ||||| ||||| ||||| | | || Sbjct 797873 ACTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGAC 797814 Query 65550 AGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCGGT 65608 ||| || | |||| | | | | | || | | || ||||||| ||| | | Sbjct 797813 TGTTACGGATACCGTGTGTCTTGACTTCCTCTCGAAGAGTC-TCCCAGTCCCAGA---GG 797758 Query 65609 TTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 | | | | | | ||| |||||| || || ||| | || | ||| || || Sbjct 797757 TCAGAG--GGCTTG-ACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAG 797701 Query 65669 CCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCG 65728 || ||| | ||| |||||||||||||| || || | || ||| || Sbjct 797700 CCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAGGCAGTGAGGGCA 797641 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 || || ||||||||||| || | || || ||||| ||||| |||| | Sbjct 797640 GCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAG 797581 Query 65789 GGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 ||||| | || | |||| || || || || ||||| || | ||| ||||| || Sbjct 797580 GGCATGCGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGG 797521 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 || |||| ||| | ||||| || |||||||||| || | ||||| || Sbjct 797520 TGGCGCATGTTGCTGTTGCGAGCCTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTG 797461 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTT 65967 |||| ||||| | || || || || ||| |||| | | ||| || | Sbjct 797460 TTCAGGTTGCGAATAACAACCTGACTGACCTCGT-GCAACTTCTTGAAGTCGTAGC---- 797406 Query 65968 AGGACG-ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 ||| | |||| ||| || | || || || || ||||| || ||||||| Sbjct 797405 AGGCCTCATCGT-AGTTGATGA----AGGAA----GGCAGAGCTAGAGAGGCAAGGTTGC 797355 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 ||||||| | ||||||||| || |||||| | |||||| |||||||| ||| | | Sbjct 797354 AGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCACAGGTTAGAACTTC 797295 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 | |||||||| | |||| ||| || |||||||| || || ||||||||||| | |||| Sbjct 797294 GGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGA 797235 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA 66206 | || | || |||||| || | ||||| ||||| | |||||| | ||||| | Sbjct 797234 AAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGA 797175 Query 66207 CCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA 66265 || | | | |||| | | | | ||||| | |||||| || ||||| ||| Sbjct 797174 TAGT-CTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCA 797116 Query 66266 CCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCC 66325 || | |||| || | || |||| || || |||||||| | ||| ||||| | | Sbjct 797115 CCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTC 797056 Query 66326 TGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCT 66385 | ||| ||||| |||||| |||||||| ||||| |||||| ||| || || || || Sbjct 797055 TTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCA 796996 Query 66386 CGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGC 66445 || |||||| | ||||| || || || | || ||||| || |||| || | ||| Sbjct 796995 CGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGC 796936 Query 66446 CATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAG 66505 || || || ||||||||||| || | || || ||| |||||| || ||||| ||| Sbjct 796935 CAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAG 796876 Query 66506 CGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG 66565 ||||| |||||||||||||| | ||| || || | ||||| ||| | || ||||| Sbjct 796875 CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTA 796816 Query 66566 CCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCC 66625 ||| ||||| ||| || || || ||| ||| || |||||||||||||| || ||| Sbjct 796815 CCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACGTTCAGACCAATACCTCCAGCC 796756 Query 66626 GTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 |||| ||||| ||||| || | | | || | | ||||| ||||| ||| Sbjct 796755 ATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC--GTAGATGCCCTCAATACTGTCGT 796698 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 |||| || | | | |||| || | |||||| | || || | || ||||| Sbjct 796697 CCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGA 796638 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 | ||||| | || || |||||| | | || ||||| ||||| ||||| | ||| Sbjct 796637 GTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTC 796578 Query 66804 CATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGT 66862 || || | || || || || | | |||| ||||| | | | |||||||| Sbjct 796577 GCTCGATATCGTCACCCCAGATACCAACAGACACA-CGCATGATCATATGCTGAGGCCGC 796519 Query 66863 TCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 ||||| | | | | | || | | | |||||| || |||| ||||||| |||||| Sbjct 796518 TCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCCAAAGTCTTGAAGCCAAAG 796459 Query 66923 TACGAGTAATTGAAATCG 66940 || ||| | ||||||| Sbjct 796458 TATTGGTATTGGAAATCG 796441 >seq1030 Length=250146 Score = 221 bits (244), Expect = 1e-52 Identities = 568/856 (66%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| | ||| | Sbjct 123362 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 123421 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| || | | |||||| | || | | || ||| || ||| | Sbjct 123422 TCCAAGGATCTCCACGACTGGAACAATCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 123481 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | | || ||||| || || || || ||||| ||||| ||||| | | || || Sbjct 123482 CACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAGCGA 123541 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| ||||| || | | ||||| ||||| ||||||||||||||||| ||| Sbjct 123542 TTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 123601 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| |||| || |||| ||| ||||||| || || ||||||| ||||| || Sbjct 123602 GAGAACATCCATTCCGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGAGCCCGCC 123661 Query 61384 GAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA----G 61438 | || | | | | ||||| ||||| ||||| || || || | | |||| | Sbjct 123662 CAGCG-AACCTACCTCTTCAACGCCATTGAGACCATTCC----TTGCATCCGAAAGAAGG 123716 Query 61439 CGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCT 61496 | || |||||| || ||||| |||| | || | || | |||| | || | | Sbjct 123717 CCGACTGGGCCATCCGATGGAT--CCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGT 123774 Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556 || || || | || |||||| | || ||||| || | |||||| | ||||| ||| | Sbjct 123775 TGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCT 123834 Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||||| ||||| || |||||||| ||||||||| ||| ||| | || || || || || Sbjct 123835 CAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 123894 Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGT 61675 ||| | || ||| ||||| | || || || || | || | |||| | Sbjct 123895 GGGTCTCCACACTGACTTTGC---CTGCCTCCTC-CACTCTCACCTTAAGGGTCGTGCCA 123950 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 || || | || || | ||| || || || || || ||||| || || | Sbjct 123951 GCAAGCAGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCA 124010 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 |||| ||| | ||| | || |||||||||||| || || ||| ||||||||||| Sbjct 124011 CTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTG 124070 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | || || ||||| ||||| | |||| | | || | || | |||| || | | | Sbjct 124071 AGTTCGTCGCCGATCGTCTCCTCGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCTAGCA 124130 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||| ||||| |||||||| | || || || | ||||||||| || || |||||||| | Sbjct 124131 ACCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGC 124190 Query 61916 GTGTAGGCGACTATCA 61931 |||| | |||||| || Sbjct 124191 GTGTTGCCGACTACCA 124206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560097217840