Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq79 401 9e-110
seq119 273 3e-71
seq76 251 1e-64
seq2 104 4e-20
seq1 84.2 3e-14
>seq79
Length=7387
Score = 401 bits (444), Expect = 9e-110
Identities = 245/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 4709 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 4766
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4767 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 4826
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4827 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 4886
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 4887 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 4946
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 4947 GCCATAGTCCCTCTAA 4962
>seq119
Length=639
Score = 273 bits (302), Expect = 3e-71
Identities = 201/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 102 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 159
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| || ||||||| ||||| | | ||| | ||||||
Sbjct 160 CTCGTTGAAGAGCAATAATTGCAATGCTCGATCCCCAGCACGACGGAGTTTAACAAGATT 219
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 220 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 277
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 326
>seq76
Length=8430
Score = 251 bits (278), Expect = 1e-64
Identities = 197/229 (86%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 4764 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 4821
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||
Sbjct 4822 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACACAGTTTAACAAGATT 4881
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| || | || | ||||| | | ||||| || | |||||||| ||||||||||
Sbjct 4882 ACCCGAACATCTCTGTCAAGGA-AGA-ACTCGCTGGCTGTGTCAGTGTAACGCGCGTGCG 4939
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4940 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4988
>seq2
Length=4950538
Score = 104 bits (114), Expect = 4e-20
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218
|||||||||||| || |||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 4862782 CATCAGTGTAGCACGTGTGCGGCCCAGAACATCTGAGGACATCACACACCTGTTATTGCC 4862723
Query 219 TCAAACTTCC 228
||||||||||
Sbjct 4862722 TCAAACTTCC 4862713
>seq1
Length=6144005
Score = 84.2 bits (92), Expect = 3e-14
Identities = 65/75 (87%), Gaps = 2/75 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|| ||||||||||||||||| |||| || ||||| |||||| |||||||||| | | |||
Sbjct 4245160 GTGCAAAGGGCAGGGACGTAATCAATGCAAGCTT-ATGACTTGCGCTTACTACGGA-TTC 4245103
Query 61 CTCGTTGAAGACCAA 75
||||||||||| |||
Sbjct 4245102 CTCGTTGAAGAGCAA 4245088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751998885395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |