Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq76 356 4e-96 seq79 291 1e-76 seq119 154 2e-35 seq2 145 1e-32 >seq76 Length=8430 Score = 356 bits (394), Expect = 4e-96 Identities = 236/258 (91%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 4907 ACTCGCTGGCTGTGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4966 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 4967 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGCG 5025 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || | || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 5026 TACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 5084 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 5085 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGA 5144 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 5145 AAGAGCTCTCAATCTGTC 5162 >seq79 Length=7387 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4853 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4912 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 4913 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 4970 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || || |||| |||||||| | ||||||||||||||| ||||| Sbjct 4971 CCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 5030 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5031 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 5090 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 5091 AGAAAGAGCTCTCAGTCTGTC 5111 >seq119 Length=639 Score = 154 bits (170), Expect = 2e-35 Identities = 91/95 (96%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 303 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 ||||||||||||||||||||||||| |||| | || Sbjct 304 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGNAG 338 >seq2 Length=4950538 Score = 145 bits (160), Expect = 1e-32 Identities = 103/117 (88%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| |||| || |||||||||| || |||||||||||||||||| ||| ||||||| || Sbjct 4862793 CTCGCTGGCCCCATCAGTGTAGCACGTGTGCGGCCCAGAACATCTGAGGACATCACACAC 4862734 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||||||||||||| |||| | |||| |||| |||||| ||||||||| Sbjct 4862733 CTGTTATTGCCTCAAACTTCCATCGGCTTG-AGCCGATAGCCCCTCTCAGAAGCCAG 4862678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798818993