Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq76 425 1e-116
seq119 349 7e-94
seq79 309 6e-82
seq2 156 8e-36
seq13 111 3e-22
seq1 93.3 8e-17
>seq76
Length=8430
Score = 425 bits (470), Expect = 1e-116
Identities = 280/309 (91%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 5071 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 5012
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5011 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 4952
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||| |||||||||| ||||| ||||||| | ||||| | |
Sbjct 4951 GATGTTCTGGGCCGCACGCGCGTTACACTGACACAGCCAGCGAGTTCTT--CCTTGACAG 4894
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4893 AGATGTTCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 4834
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 4833 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 4774
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 4773 CCCTTTGTA 4765
>seq119
Length=639
Score = 349 bits (386), Expect = 7e-94
Identities = 219/235 (93%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 94 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 276
Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213
|||||||||||||||||| |||||| ||||| | || |||| ||| |||||| ||||||
Sbjct 275 CACGCGCGCTACACTGACGGAGCCAGCGAGTACTTC--CTTGTCCGAAAGGTCCGGGTAA 218
Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 217 TCTTGTTAAACTCCGTCGTGCTGGGGATCGAGCATTGCAATTATTGCTCTTCAACGAGGA 158
Query 274 ATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 157 ATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 103
>seq79
Length=7387
Score = 309 bits (342), Expect = 6e-82
Identities = 261/317 (82%), Gaps = 14/317 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | | | |||| || |||
Sbjct 5020 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 4965
Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||||| | ||| | ||| | |||||||||||||||||||||||||||||
Sbjct 4964 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 4906
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 4905 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 4846
Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251
|||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||
Sbjct 4845 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 4787
Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311
|||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||
Sbjct 4786 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 4727
Query 312 CGTCCCTGCCCTTTGTA 328
|||||||||||||||||
Sbjct 4726 CGTCCCTGCCCTTTGTA 4710
>seq2
Length=4950538
Score = 156 bits (172), Expect = 8e-36
Identities = 103/114 (90%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 70 GGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4862680 GGCTTCTGAGAGGGGCTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTGTGT 4862739
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183
|||| ||| |||||||||||||||||| || |||||||||| | |||| ||||
Sbjct 4862740 GATGTCCTCAGATGTTCTGGGCCGCACACGTGCTACACTGATGGGGCCAGCGAG 4862793
>seq13
Length=1099208
Score = 111 bits (122), Expect = 3e-22
Identities = 111/143 (78%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 107 GTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166
||||| | || ||||||||| ||||| ||||||| |||| | |||||||||| |||
Sbjct 566097 GTTTGGGAAAAATACAGGTCTGGGATGCTCTTAGATATTCTTGATCGCACGCGCGTGACA 566038
Query 167 CTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226
|||| ||||| | ||| || ||||| ||| |||| | ||||| |||||||||||||
Sbjct 566037 CTGATGAAGCCAGCCAGT--ATTTCCTTGCCCGAAAGGCCCGGGTATTCTTGTTAAACTC 565980
Query 227 TGTCGTGCTGGGGATAGAGCATT 249
||||| | |||| ||||||||
Sbjct 565979 CGTCGTCCGTGGGACAGAGCATT 565957
>seq1
Length=6144005
Score = 93.3 bits (102), Expect = 8e-17
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
|||||||||||||||||||| | |||||||||| ||||| ||| || |||||||||||
Sbjct 4245087 ATTGCTCTTCAACGAGGAATCCGTAGTAAGCGCAAGTCATAAGCTTGCATTGATTACGTC 4245146
Query 316 CCTGCCCTTTG 326
|||||||||||
Sbjct 4245147 CCTGCCCTTTG 4245157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947198550784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |