Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq76 425 1e-116 seq119 349 7e-94 seq79 309 6e-82 seq2 156 8e-36 seq13 111 3e-22 seq1 93.3 8e-17 >seq76 Length=8430 Score = 425 bits (470), Expect = 1e-116 Identities = 280/309 (91%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 5071 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 5012 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5011 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 4952 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| |||||||||| ||||| ||||||| | ||||| | | Sbjct 4951 GATGTTCTGGGCCGCACGCGCGTTACACTGACACAGCCAGCGAGTTCTT--CCTTGACAG 4894 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 | || |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 4893 AGATGTTCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 4834 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 4833 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 4774 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 4773 CCCTTTGTA 4765 >seq119 Length=639 Score = 349 bits (386), Expect = 7e-94 Identities = 219/235 (93%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 94 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 276 Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 |||||||||||||||||| |||||| ||||| | || |||| ||| |||||| |||||| Sbjct 275 CACGCGCGCTACACTGACGGAGCCAGCGAGTACTTC--CTTGTCCGAAAGGTCCGGGTAA 218 Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 217 TCTTGTTAAACTCCGTCGTGCTGGGGATCGAGCATTGCAATTATTGCTCTTCAACGAGGA 158 Query 274 ATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || |||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 157 ATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 103 >seq79 Length=7387 Score = 309 bits (342), Expect = 6e-82 Identities = 261/317 (82%), Gaps = 14/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | | |||| || ||| Sbjct 5020 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 4965 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 4964 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 4906 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 4905 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 4846 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 4845 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 4787 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 4786 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 4727 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 4726 CGTCCCTGCCCTTTGTA 4710 >seq2 Length=4950538 Score = 156 bits (172), Expect = 8e-36 Identities = 103/114 (90%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4862680 GGCTTCTGAGAGGGGCTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTGTGT 4862739 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 |||| ||| |||||||||||||||||| || |||||||||| | |||| |||| Sbjct 4862740 GATGTCCTCAGATGTTCTGGGCCGCACACGTGCTACACTGATGGGGCCAGCGAG 4862793 >seq13 Length=1099208 Score = 111 bits (122), Expect = 3e-22 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 107 GTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166 ||||| | || ||||||||| ||||| ||||||| |||| | |||||||||| ||| Sbjct 566097 GTTTGGGAAAAATACAGGTCTGGGATGCTCTTAGATATTCTTGATCGCACGCGCGTGACA 566038 Query 167 CTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||| ||||| | ||| || ||||| ||| |||| | ||||| ||||||||||||| Sbjct 566037 CTGATGAAGCCAGCCAGT--ATTTCCTTGCCCGAAAGGCCCGGGTATTCTTGTTAAACTC 565980 Query 227 TGTCGTGCTGGGGATAGAGCATT 249 ||||| | |||| |||||||| Sbjct 565979 CGTCGTCCGTGGGACAGAGCATT 565957 >seq1 Length=6144005 Score = 93.3 bits (102), Expect = 8e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 |||||||||||||||||||| | |||||||||| ||||| ||| || ||||||||||| Sbjct 4245087 ATTGCTCTTCAACGAGGAATCCGTAGTAAGCGCAAGTCATAAGCTTGCATTGATTACGTC 4245146 Query 316 CCTGCCCTTTG 326 ||||||||||| Sbjct 4245147 CCTGCCCTTTG 4245157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198550784