Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 700 0.0 seq1 80.6 1e-12 >seq4 Length=8388633 Score = 700 bits (776), Expect = 0.0 Identities = 555/657 (84%), Gaps = 12/657 (2%) Strand=Plus/Minus Query 30 CTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCT 89 ||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||| Sbjct 8385175 CTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCT 8385116 Query 90 AAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8385115 AAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 8385056 Query 150 CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 ||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||| Sbjct 8385055 CACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCA 8384996 Query 210 GACTTGCCCGCAGTTGCTCAAC-CGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGGC 267 |||||| | ||| ||| | || ||| || ||||||| ||| | || ||||| Sbjct 8384995 GACTTGGGCTTGGTTAATCATCTGGGGTTCTC-CCCAGTGCACTTTTC--CAGTCCAGGC 8384939 Query 268 CAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGT 327 ||||||||| | || | |||||||||| |||||||||||| ||| |||||| |||| Sbjct 8384938 CAGCATCAGTTTTCGCCGGGGGATAAAGGCTTCGGGAATGTGGCTCCCCTCGGGGAGTGT 8384879 Query 328 TATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGCT 387 ||||||||| ||| ||| | | || |||||||||| |||||| | || |||||||| Sbjct 8384878 TATAGCCCGTTGTGTAATAC-CCTGGCGGGGACTGAGGTTCGCGCTTCTGCAAGGATGCT 8384820 Query 388 GGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC-TATG 446 ||||||||||| | | || ||||||||| |||||||||||||||||| | || |||| Sbjct 8384819 GGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCTTCGTATG 8384761 Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 |||||||| |||||| |||||| | ||||||||||||||||||| ||||| || | Sbjct 8384760 CGAGTGTTCGGGTGTAAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA----GCT 8384705 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 || ||| ||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 8384704 TCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCATACGGGG 8384645 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8384644 CCGGACCCGAAAGAAGGTGAACTATGCCTGTGTAGGGTGAAGCCAGAGGAAACTCTGGTG 8384585 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| Sbjct 8384584 GAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACATGGGCATGGGGGCGA 8384528 Score = 86.0 bits (94), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 7/119 (6%) Strand=Plus/Plus Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502 |||||||| || |||||| |||| | |||||| |||| |||||| |||| || | Sbjct 525262 TATGCGAGCATTCGGGTGTAAAACTCCCACGCGTA-TGAA--TGAACGCGGGTGAGAGCT 525318 Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 561 || ||| ||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 525319 TC----GGCGCATCATCGACCGATCCTGATGTTCTCGGATGGGTTTGAGTAAGAGCATA 525373 >seq1 Length=11790407 Score = 80.6 bits (88), Expect = 1e-12 Identities = 87/114 (76%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGAT 532 |||||||||||||||||| | || || || || || ||| |||||| |||||| Sbjct 7851826 GCGTAATGAAAGTGAACGCAATTGAGA----GTTTCGGCTCATCATTGACCGACCCTGAT 7851771 Query 533 GTCTTCGGATGGATTTGAG-TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 | ||||||||||||||| |||||||||| | |||||||||||| |||| Sbjct 7851770 ATTCTCGGATGGATTTGAGTTAAGAGCATATGGGGCCGGACCCGAAAGAAGGTG 7851717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079996117550