Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq4 118 4e-21 seq1 91.5 6e-13 >seq4 Length=8388633 Score = 118 bits (130), Expect = 4e-21 Identities = 216/314 (69%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 12733 AACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACC 12792 ||||||||| ||| || |||||||| | | ||| || |||||||| | ||||||||| Sbjct 3773529 AACATCGTAGTAGATGACGTTCATGCCCATAGCCTCAGCGAGGACAGACAGCTGAGAACC 3773470 Query 12793 AATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGA 12852 ||||| ||| || || || ||||| || || || |||| || || | || || | ||| Sbjct 3773469 AATGTGACCGTAGCCGACAATACCCAGAGTTTTGCCTCGAATCTCCCAGC-ACTTGGAGC 3773411 Query 12853 AG-TCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911 | ||||||||| |||| |||| | || ||| || || || | ||||| | || Sbjct 3773410 TGACCTTGTTCCAGGTGCCACGGTGCATCTCGTTGGATCGGTCGCCGAGTTGACGGGCAA 3773351 Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971 | | || | | | |||| |||||| || || || | | |||| ||||| || | Sbjct 3773350 GGGTGATGATCTCGGCAATGACGAGCTCAGCGACACTGCGCGAGTTGGCGAAGGGGGAGT 3773291 Query 12972 TAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGC 13031 | ||||| || || || |||| ||| | || || | ||||| | | |||||| | Sbjct 3773290 TGAAGACGGCGATACCATTCTTGGCAGCAAACTCGAGGTCGACCTGGTTGGTACCAATAC 3773231 Query 13032 AGAAGCATCCTATG 13045 ||||||| || ||| Sbjct 3773230 AGAAGCAGCCAATG 3773217 >seq1 Length=11790407 Score = 91.5 bits (100), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | ||||||||||||| || || || || || | Sbjct 8519083 CAATTGTCATACGAGACGGAATGGCGTGAGGGTTGATGATAATATCTGGTGTCAAACCTT 8519024 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544 | | | ||||||||||| || | || | | ||| || || |||||||| | | Sbjct 8519023 CTCTGCTGAAGGGCATATCCTCCTGTCGATAAGTAACACCGATTGTACCCTTTTGACCGT 8518964 Query 364545 AGCGAGAAGCAAACTTGTCGCCAATGACTGGG 364576 ||||||||||||||||| ||||| ||||| Sbjct 8518963 GACGAGAAGCAAACTTGTCACCAAT--CTGGG 8518934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884882028830633