Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq15 230 4e-58
seq4 179 6e-43
>seq15
Length=2137
Score = 230 bits (254), Expect = 4e-58
Identities = 225/282 (80%), Gaps = 15/282 (5%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1713 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1656
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1655 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1596
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | ||||| || ||||| |
Sbjct 1595 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATA-GCCTCGGCTTAGCGT 1539
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|||||||||| | | |||| || |||||||| | | | | | ||| ||
Sbjct 1538 CTTAGCAGGCGATTCCTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 1485
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||||| || | || ||| ||||||||||||||||||
Sbjct 1484 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 1443
>seq4
Length=8156551
Score = 179 bits (198), Expect = 6e-43
Identities = 157/190 (83%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| |||||||| ||||||| |||||||||| ||||| | || |||
Sbjct 7944981 GTACGAGAGGAACCGCT-AATTCAGA-TAATTGGGTTTTGCGGCTATCTGATCGGGTAGT 7945038
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 7945039 GCCGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGTTAGAATCCATGCCA 7945098
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | ||| || | | ||||||| | | |||| ||||||| ||||| | |
Sbjct 7945099 GAATGCGGTAATAC-CACCTGCAC-GCACGGATAGATAAAAATAGGCCTCGGCTTAGCGC 7945156
Query 181 CTTAGCAGGC 190
||||||||||
Sbjct 7945157 CTTAGCAGGC 7945166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199793664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |