Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq15 230 4e-58 seq4 179 6e-43 >seq15 Length=2137 Score = 230 bits (254), Expect = 4e-58 Identities = 225/282 (80%), Gaps = 15/282 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1713 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1656 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1655 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1596 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||| || ||||| | Sbjct 1595 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATA-GCCTCGGCTTAGCGT 1539 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | |||| || |||||||| | | | | | ||| || Sbjct 1538 CTTAGCAGGCGATTCCTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 1485 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| |||||||||||||||||| Sbjct 1484 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 1443 >seq4 Length=8156551 Score = 179 bits (198), Expect = 6e-43 Identities = 157/190 (83%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| |||||||| ||||||| |||||||||| ||||| | || ||| Sbjct 7944981 GTACGAGAGGAACCGCT-AATTCAGA-TAATTGGGTTTTGCGGCTATCTGATCGGGTAGT 7945038 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 7945039 GCCGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGTTAGAATCCATGCCA 7945098 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | ||| || | | ||||||| | | |||| ||||||| ||||| | | Sbjct 7945099 GAATGCGGTAATAC-CACCTGCAC-GCACGGATAGATAAAAATAGGCCTCGGCTTAGCGC 7945156 Query 181 CTTAGCAGGC 190 |||||||||| Sbjct 7945157 CTTAGCAGGC 7945166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199793664