Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 264 9e-66 >seq3 Length=7630574 Score = 264 bits (292), Expect = 9e-66 Identities = 1125/1752 (64%), Gaps = 54/1752 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | || ||||||||||| || Sbjct 1352463 ATCAACGGTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGT 1352404 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194 |||||| || ||| ||| || ||| ||||| | || | || |||| | | || Sbjct 1352403 CTTGAGACCGAGCTT-CCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATGGTAGGG 1352346 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || || | |||||| |||||| ||| | |||||| || |||||| Sbjct 1352345 TCCTTCATGTGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCC 1352286 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 || | | | | || || |||||||| || ||||||||||| | | | | ||| Sbjct 1352285 ATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAGTCTTGTACAGA-GCCTTGATCTC 1352227 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 || || | |||| ||||| ||||| | ||||| ||||| || ||| Sbjct 1352226 GGCAGGGATGTTGGGGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCAT 1352167 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACT 65431 | || ||||| | ||||| |||| ||||| |||| ||| | | |||| || Sbjct 1352166 AGCATCGGACCAAAGACCCATGTCGACAAGATCCTTGAG--AAGCCAGGGGTTGACAACC 1352109 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||||||||| | || || || || ||||||||||| ||| || |||||| | Sbjct 1352108 TGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCAC 1352049 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 || ||||||| ||||| || | ||| || || ||||| ||||| || | || | Sbjct 1352048 TCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTG 1351989 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | | | | | || | ||||| | ||| | | | | Sbjct 1351988 TTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAATCCCAAA---GATCA 1351932 Query 65612 TCG---TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 | | ||||| | ||||| || || || | || | ||| || ||| Sbjct 1351931 GAGGGCTTGACATTC------CACATGTCAAACTGGAGAATACCCTCAGAGGCAGGGGAA 1351878 Query 65669 CCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAGT 65725 || ||| | ||| || ||||||||||| ||||| |||| |||| || Sbjct 1351877 CCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTTGCACAGACGTGGTA---AGG 1351821 Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 || ||| || ||||||||||| || | || || ||||| ||||| ||| Sbjct 1351820 GCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCA 1351761 Query 65786 TACGGCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 | ||||| | | || ||| | | || || ||||||||||| |||| ||| ||| Sbjct 1351760 AAGGGCATGCGGA---GGGCAAGGAAGGCATCAGCGAGACCTTGAACACCAAGACCAATG 1351704 Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATA 65902 || || ||||||| ||| | ||||| | |||||||||| |||| ||||| Sbjct 1351703 GGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATG 1351644 Query 65903 ATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAA 65961 || ||||||||||| || || || || ||| ||| | | ||| || Sbjct 1351643 ATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGT-GCAGCTTCTTGAAGTCG-- 1351587 Query 65962 ATGTTTAGGACG-ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGG-CAAGAGATGCG 66019 ||| | | ||| | | | | || ||| || | |||| || || Sbjct 1351586 -----TAGCAAGCATCTTCATAGTTG------ATGAAAGAGGGCAGAGACAAG-GAGGCA 1351539 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 |||||||| ||||| | ||| ||||| ||| || || | || || |||||||| || Sbjct 1351538 AGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCACAGGTTG 1351479 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || || ||||| || | |||| ||| || |||||||||||||| ||||||||| Sbjct 1351478 GAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATCCTTGTAG 1351419 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | |||| | || | || ||||| |||| ||||| ||||||| |||||| | Sbjct 1351418 AGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGA 1351359 Query 66200 GCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258 ||||| | | || | | |||| ||| | | ||||| | |||||| || || || Sbjct 1351358 GCCTTGATAG-ACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAA 1351300 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 ||||| | || | |||| || || | || || ||||| || | ||| || Sbjct 1351299 TTCGTCACCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGAGTCCATTC 1351240 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 || | | || ||||| ||| || |||||||| ||||| || || ||| || || Sbjct 1351239 GCCGTTCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCCAGGAACAGGTC 1351180 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 || || || |||||| | ||||| || || || | || |||||||| |||| ||| Sbjct 1351179 ACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACGTC 1351120 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||| |||||||| || |||||||||||||| | || || ||| ||||| ||||| Sbjct 1351119 GGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTC 1351060 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 |||||| ||||| |||||||| ||||||| ||| || || | ||||| || | || Sbjct 1351059 GACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATACCGTTGGAAGTACC 1351000 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 |||||| ||| ||||| || || || || || ||| | || | |||||||| Sbjct 1350999 ATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTTAAGCCAATACC 1350940 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGA 66678 ||| ||| |||| || || |||||| | || | | || || |||||| Sbjct 1350939 ACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATCAATGCT 1350880 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| || | ||| ||||||| || || || | || || |||| Sbjct 1350879 GTCCTCCTTCATATCAACAAGGAAGCATGATGAGAGCTGAGGCTGTGGGGTACCGGCGTT 1350820 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 ||| | ||||| | || || || ||| | | || |||||| ||||| ||||| | Sbjct 1350819 GAACAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGTCTCCAA 1350760 Query 66799 GACAGCATCAAT 66810 |||| ||||| Sbjct 1350759 GACACGCTCAAT 1350748 Score = 176 bits (194), Expect = 4e-39 Identities = 379/561 (68%), Gaps = 17/561 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | |||||| ||||| | Sbjct 2145840 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2145781 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| || | | |||||| | ||||| | | || ||| | ||||| Sbjct 2145780 TCCAAGGATCTCCACGACTGGAACAACCGTTTGACTTCGGACGAGCAATACTTCATCTCC 2145721 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | | || ||||| || || || ||||| |||||||||||||| | | || || Sbjct 2145720 CACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAACCTTGTTGAGCGA 2145661 Query 61264 TTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | ||||| || || ||||| || |||||||| || Sbjct 2145660 TTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGAT 2145602 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| || | ||| | ||||||||||| ||||||| ||| | || Sbjct 2145601 GGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTGC 2145542 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA----G 61438 | ||| | | ||||| ||| | || || || || || | | |||| | Sbjct 2145541 CCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCC----TTGCATCCGAAAGAAGG 2145486 Query 61439 CGGATTGGGCCTTCAATTGGATCACCAGTACA--ACGGCTACATTTGGTGAACGATTGCT 61496 ||||||||||| || ||||| |||| ||| | || | |||| | | || | | Sbjct 2145485 CGGATTGGGCCATCCGATGGAT--CCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGT 2145428 Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556 || ||||| | || |||||| | || ||||| || | ||||| | ||||| ||| | Sbjct 2145427 TGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCT 2145368 Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||||| ||||| || ||||| ||||||| ||| ||| ||| | || || || || || Sbjct 2145367 CAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATTTCTCGTGATGA 2145308 Query 61617 GGGCATGCATTGTGATTTTGC 61637 ||| | || ||| ||||| Sbjct 2145307 GGGTCTTCACACTGACTTTGC 2145287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567980618560