Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F001703955.1_202016- 08-12] 4 sequences; 36,178,456 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq4 109 2e-18 seq1 95.1 5e-14 >seq4 Length=8011673 Score = 109 bits (120), Expect = 2e-18 Identities = 214/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 12733 AACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACC 12792 ||||||||| ||| ||| |||||||| | | ||| || || ||||| | ||||||||| Sbjct 3711984 AACATCGTAGTAGATAACGTTCATGCCCATAGCCTCAGCGAGAACAGACAGCTGAGAACC 3711925 Query 12793 AATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGA 12852 ||||| ||| || || || || || || ||||| |||| || || | || || | ||| Sbjct 3711924 AATGTGACCGTAGCCGACAATTCCCAGAGTCTTACCTCGAATCTCCCAGC-ACTTGGAGC 3711866 Query 12853 AG-TCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911 | ||||||||| | || |||| | || ||| || || || | |||||| | || Sbjct 3711865 TGACCTTGTTCCAGGTACCGCGGTGCATCTCGTTGGATCGGTCGCCGAGCTGACGGGCAA 3711806 Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971 | | || | | | |||| ||||| || || || | | |||| ||||| || | Sbjct 3711805 GGGTGATGATCTCGGCAATGACAAGCTCAGCGACACTGCGCGAGTTGGCGAAGGGGGAGT 3711746 Query 12972 TAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGC 13031 | ||||| || || || |||| || | || || | ||||| | | |||||| | Sbjct 3711745 TGAAGACGGCGATACCATTCTTGGCGGCAAACTCGAGGTCGACCTGGTTGGTACCAATAC 3711686 Query 13032 AGAAGCATCCTATG 13045 ||||||| || ||| Sbjct 3711685 AGAAGCAGCCGATG 3711672 >seq1 Length=11717239 Score = 95.1 bits (104), Expect = 5e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||| | | ||||||||||||| |||||||| || ||| | Sbjct 8550904 CAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGATAATGTCAGGAGTCAGGCCCT 8550845 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544 | | | || |||||||| || | || | | | ||| || || |||||||| | | Sbjct 8550844 CTCTGCTGAAAGGCATATCCTCCTGTCGATAGGTAACACCGATTGTACCCTTTTGACCGT 8550785 Query 364545 AGCGAGAAGCAAACTTGTCGCCAAT 364569 |||||||| |||||||| ||||| Sbjct 8550784 GACGAGAAGCGAACTTGTCACCAAT 8550760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884886303399572