Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq391 298 8e-79
seq333 279 8e-73
seq500 275 9e-72
seq390 262 6e-68
seq36 89.7 8e-16
>seq391
Length=1074
Score = 298 bits (330), Expect = 8e-79
Identities = 208/231 (90%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
Sbjct 411 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 468
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| || ||||| ||||||
Sbjct 469 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAAAGTTTCACAAGATT 528
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||||||||||| | ||||| || | |||||||||||||||||||
Sbjct 529 ACCCAGACCTTCCGGCCAAGGTGAGA-ACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCG 587
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 638
>seq333
Length=4014
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 1510 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 1567
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 1568 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 1627
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 1628 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1685
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1734
>seq500
Length=623
Score = 275 bits (304), Expect = 9e-72
Identities = 169/179 (94%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 78 ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCA 137
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCA 60
Query 138 AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGCTATAAGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 120
Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||
Sbjct 121 CATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAA 179
>seq390
Length=1079
Score = 262 bits (290), Expect = 6e-68
Identities = 198/229 (86%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| |
Sbjct 551 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 494
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||| ||||| | |||||||| |||||||| | ||||||| |||| ||||||
Sbjct 493 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 434
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| ||| |||||| || |||||||||| |||||||||||||||||||||
Sbjct 433 ACCCAGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 374
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 373 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 325
>seq36
Length=243097
Score = 89.7 bits (98), Expect = 8e-16
Identities = 79/95 (83%), Gaps = 3/95 (3%)
Strand=Plus/Minus
Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93
|||||||| |||||||||||| | ||||||| | |||| ||| |||| ||||| ||||||
Sbjct 138682 TGATGACTTGCGCTTACTAGGGA-TTCCTCGCTAAAGAGCAATAATTACAATGCTCTATC 138624
Query 94 CCCATCACGATGAAATTTCA-AAGATTAC-CCGGA 126
|||| ||||| | | ||| | |||||||| |||||
Sbjct 138623 CCCAGCACGACGGAGTTTGACAAGATTACTCCGGA 138589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751992999115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |