Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq333 468 9e-130
seq360 131 3e-28
seq368 109 1e-21
seq322 95.1 2e-17
>seq333
Length=4014
Score = 468 bits (518), Expect = 9e-130
Identities = 293/314 (93%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||| ||| ||||||
Sbjct 2465 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCTCATGCCCTTCACTGGGCGTGGCGGGGA 2406
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||| |||||||||||||||| || | |||||||| |||||||||||||
Sbjct 2405 AACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 2346
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2345 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 2286
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2285 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 2226
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 2225 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 2167
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 2166 ACGAAAGTTAGGGG 2153
>seq360
Length=1729
Score = 131 bits (144), Expect = 3e-28
Identities = 129/164 (79%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 1567 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1626
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 1627 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1685
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234
||| ||||| ||||||||| | ||||| || ||||||||||
Sbjct 1686 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTG 1729
>seq368
Length=1447
Score = 109 bits (120), Expect = 1e-21
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 21 TTCCTTCTGGG-GATCCG-CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTAC 78
|| ||||| || || ||| ||||||||| |||||||||| |||||| |||||||||||||
Sbjct 1359 TTACTTCTTGGTGAGCCGGCATGCCCTTTACTGGGTGTGTCGGGGAACCAGGACTTTTAC 1418
Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGG 107
|||| |||||||||||||||||||||||
Sbjct 1419 CTTGAGAAAATTAGAGTGTTCAAAGCAGG 1447
>seq322
Length=6685
Score = 95.1 bits (104), Expect = 2e-17
Identities = 63/70 (90%), Gaps = 4/70 (6%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129
|||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 70 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 11
Query 130 TGGAATAATA 139
||||||||||
Sbjct 10 TGGAATAATA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915191204928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |