Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq391 118 6e-25
seq333 100 2e-19
seq390 77.0 2e-12
>seq391
Length=1074
Score = 118 bits (130), Expect = 6e-25
Identities = 97/112 (87%), Gaps = 6/112 (5%)
Strand=Plus/Plus
Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72
||||| ||||| ||| |||||||||| | || | |||||||||||||| || ||||||
Sbjct 338 CCGTT-GCCGGCTCCCCAAAGCCAATCCGGAGAC--CTCACTAAGCCATT-CAATCGGTA 393
Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||| ||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct 394 GTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 443
>seq333
Length=4014
Score = 100 bits (110), Expect = 2e-19
Identities = 70/76 (92%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1470 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1527
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 1528 TAAT-CAACGCAAGCT 1542
>seq390
Length=1079
Score = 77.0 bits (84), Expect = 2e-12
Identities = 68/81 (84%), Gaps = 3/81 (4%)
Strand=Plus/Minus
Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103
|| || |||| || |||| || ||||||| ||||||||||| |||||||||||||||
Sbjct 596 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 539
Query 104 GGACGTAATACAACGCAAGCT 124
||||||||| ||| |||||||
Sbjct 538 GGACGTAAT-CAATGCAAGCT 519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300797289980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |