Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq391 457 2e-126
seq333 443 4e-122
seq390 255 1e-65
seq500 197 3e-48
seq36 127 4e-27
>seq391
Length=1074
Score = 457 bits (506), Expect = 2e-126
Identities = 289/310 (93%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||| |||||| ||||| || |||||| | ||||||||
Sbjct 720 GAACGAGACCTTAACCTGCTAAATAGTCAGGCCGGCTTTTGCTGGTCGCAGACTTCTTAG 661
Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||| || || || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGGACTGTCAGCGTCTAGCTGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 601
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 600 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTTC-TCACCTTGGCC 542
Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 541 GGAAGGTCTGGGTAATCTTGTGAAACTTTGTCGTGCTGGGGATAGAGCATTGCAATTATT 482
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 481 GCTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCCT 422
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 421 GCCCTTTGTA 412
>seq333
Length=4014
Score = 443 bits (490), Expect = 4e-122
Identities = 284/309 (92%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 1817 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 1758
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1698
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| |||
Sbjct 1697 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 1640
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1639 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1580
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1579 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 1520
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 1519 CCCTTTGTA 1511
>seq390
Length=1079
Score = 255 bits (282), Expect = 1e-65
Identities = 213/260 (82%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||||||| | || | ||| || | ||||||| ||||||||||||||||||
Sbjct 291 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 350
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 351 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 410
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
|||||| || |||||||||||||||||| || ||||||| |||||||| |
Sbjct 411 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 470
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||| | |||| |||||||||| |||||||| ||| ||||||||| || ||||
Sbjct 471 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 530
Query 309 TTACGTCCCTGCCCTTTGTA 328
||||||||||||||||||||
Sbjct 531 TTACGTCCCTGCCCTTTGTA 550
>seq500
Length=623
Score = 197 bits (218), Expect = 3e-48
Identities = 193/244 (79%), Gaps = 16/244 (7%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG------CTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | || |||| || |||
Sbjct 237 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGG----CCAGCT 182
Query 74 TCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| |||| | | |||| ||||||||||||||||||||||||||||
Sbjct 181 TCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGTG 124
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||||||||||||||| | ||||||| | ||
Sbjct 123 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGCTTATAG 64
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||
Sbjct 63 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 5
Query 251 CAAT 254
||||
Sbjct 4 CAAT 1
>seq36
Length=243097
Score = 127 bits (140), Expect = 4e-27
Identities = 82/90 (91%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269
|||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 138595 GTAATCTTGTCAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTTTAGCG 138654
Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGC 299
|||||| |||||||||||| |||||||||
Sbjct 138655 AGGAATCCCTAGTAAGCGCAAGTCATCAGC 138684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947190897408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |