Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq337 798 0.0
seq322 600 4e-169
seq9 132 2e-28
seq72 89.7 2e-15
>seq337
Length=3204
Score = 798 bits (884), Expect = 0.0
Identities = 500/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1762 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 1703
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1702 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 1643
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 1642 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 1585
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 1584 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 1528
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 1527 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1468
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1408
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1348
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1347 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 1288
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1287 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1231
>seq322
Length=6685
Score = 600 bits (664), Expect = 4e-169
Identities = 459/538 (85%), Gaps = 13/538 (2%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| |||||| ||||||||||||||| |||| | |||||||||||||| |||||
Sbjct 3271 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 3330
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||| ||||| || || | ||
Sbjct 3331 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 3390
Query 127 GGCCCG-CGAAGGACC----TTAACGCCAGAAA--ATGGTCGGTGAAGAC---CAGTTCC 176
|| | | || | || ||| | |||| | | | | || | | ||| | |
Sbjct 3391 ACCCAGGCAAAAGCCCAAGTTTACAACTAGAACTGAGCGACCGCGAGGCCACACAGATGC 3450
Query 177 G-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235
| |||| | ||||||||| ||| | || ||||||||||||||| || | | |
Sbjct 3451 TACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACAGACGGCAGAGC- 3509
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 3510 -CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 3568
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 3569 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 3628
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 3629 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 3688
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3689 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 3748
Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3749 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 3806
>seq9
Length=380760
Score = 132 bits (146), Expect = 2e-28
Identities = 93/106 (88%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399
|| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 225330 GGTTGTGGTTTCGGTAGATAGTAGATAGGGATAGTGGGAATCTCGTCAATCCATTCATGC 225271
Query 400 GCGTCACTAATTAGATGA----CGAGGCATTTGGCTACCTTAAGAG 441
|| ||||||||| ||||| | ||||||||||||||||||||
Sbjct 225270 GCATCACTAATTCGATGACTTCCATAGCATTTGGCTACCTTAAGAG 225225
>seq72
Length=168666
Score = 89.7 bits (98), Expect = 2e-15
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTC 541
|| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 83639 TTACTTTCCTTTGGCATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTC 83580
Query 542 TG 543
||
Sbjct 83579 TG 83578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635184285728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |